Man pages for erichround/glottoTrees
Phylogenetic Trees in Linguistics
| abridge_labels | Shorten labels to a glottocode substring |
| add_tip | Add tips to a tree |
| apply_duplicate_suffixes | Apply duplicate suffixes to tips and nodes |
| assemble_rake | Bind trees as a high-level rake |
| assemble_supertree | Create a glottolog super-tree |
| clone_tip | Clone tips |
| collapse_node | Collapse one or more nodes rootwards |
| convert_to_tip | Convert nodes to tips |
| extract_glottocode | Extract glottocode substrings |
| get_glottolog_families | Simple family metadata |
| get_glottolog_languages | Simple language metadata |
| get_glottolog_phylo_geo | Extended glottolog metadata |
| get_glottolog_trees | Glottolog trees by version |
| glottolog_geography | Geographical data from glottolog, versions 4.0 - 5.0 |
| glottolog_trees | Trees from glottolog, versions 4.0 - 5.0 |
| keep_as_tip | Keep tips and convert nodes to tips |
| keep_tip | Keep tips |
| move_node | Move a node |
| move_tip | Move a tip |
| nonbranching_nodes | Find nodes with a single child |
| plot_glotto | Plot a tree in downward, linguistic style |
| relabel_node | Change node labels |
| relabel_tip | Change tip labels |
| relabel_with_names | Change labels from glottocodes to names |
| remove_clade | Remove clades |
| remove_tip | Remove tips |
| rescale_branches | Set all branch length to 1 |
| rescale_branches_constrained | Exponentialize branch lengths using constraints |
| rescale_branches_exp | Exponentialize branch lengths |
| rescale_deepest_branches | Set length of deepest branches |
| ultrametricize | Ultrametricize tree by stretching final edges |
| which_tree | Tree numbers of glottolog families |
