Files in ethanbass/chromatographR
Chromatographic Data Analysis Toolset
.Rbuildignore
.github/.gitignore
.github/FUNDING.yml
.github/contributing.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/rhub.yaml
.gitignore
.zenodo.json
CRAN-SUBMISSION
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/attach_metadata.R
R/chromatographR-package.R
R/cluster_spectra.R
R/combine_peaks.R
R/correct_peaks.R
R/correct_rt.R
R/filter_peaks.R
R/fit_gaussian.R
R/fit_peaks.R
R/get_peaks.R
R/get_peaktable.R
R/get_purity.R
R/plot.peak_list.R
R/plot.peak_table.R
R/plot_chroms.R
R/plot_spectrum.R
R/preprocess.R
R/read_chroms.R
R/reshape_chroms.R
R/utils.R
R/write_peaktable.R
README.md
_pkgdown.yml
chromatographR.Rproj
cran-comments.md
data/Sa.RData
data/Sa_pr.RData
data/Sa_warp.RData
data/pk_tab.RData
inst/CITATION
inst/WORDLIST
inst/extdata/Sa_metadata.csv
man/Sa.Rd
man/Sa_pr.Rd
man/Sa_warp.Rd
man/attach_metadata.Rd
man/attach_ref_spectra.Rd
man/boxplot.peak_table.Rd
man/chromatographR-package.Rd
man/cluster_spectra.Rd
man/combine_peaks.Rd
man/correct_peaks.Rd
man/correct_rt.Rd
man/figures/logo.png
man/filter_peaks.Rd
man/filter_peaktable.Rd
man/find_peaks.Rd
man/fit_peaks.Rd
man/get_agilent_threshold.Rd
man/get_lambdas.Rd
man/get_peaks.Rd
man/get_peaktable.Rd
man/get_purity.Rd
man/get_times.Rd
man/merge_peaks.Rd
man/mirror_plot.Rd
man/normalize_data.Rd
man/pk_tab.Rd
man/plot.peak_list.Rd
man/plot.peak_table.Rd
man/plot.ptw_list.Rd
man/plot_all_spectra.Rd
man/plot_chroms.Rd
man/plot_spectrum.Rd
man/preprocess.Rd
man/reexports.Rd
man/reshape_chroms.Rd
man/reshape_peaktable.Rd
man/scan_chrom.Rd
man/subset.peak_table.Rd
man/trim_peak.Rd
man/write_peaktable.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/_snaps/pipeline/alignment-ggp-zoom.svg
tests/testthat/_snaps/pipeline/alignment-ggp.svg
tests/testthat/_snaps/pipeline/alignment-plotly-no-legend.svg
tests/testthat/_snaps/pipeline/alignment-plotly-zoom.svg
tests/testthat/_snaps/pipeline/alignment-plotly.svg
tests/testthat/_snaps/pipeline/alignment.svg
tests/testthat/_snaps/pipeline/boxplot1.svg
tests/testthat/_snaps/pipeline/boxplot2.svg
tests/testthat/_snaps/pipeline/mirror1.svg
tests/testthat/_snaps/pipeline/mirror2.svg
tests/testthat/_snaps/pipeline/peak-table-plot.svg
tests/testthat/_snaps/pipeline/plot-all-spectra-ggplot.svg
tests/testthat/_snaps/pipeline/plot-all-spectra.svg
tests/testthat/_snaps/pipeline/plot-both-ggplot.svg
tests/testthat/_snaps/pipeline/plot-both-plotly.svg
tests/testthat/_snaps/pipeline/plot-peak-list-gaussian.svg
tests/testthat/_snaps/pipeline/plot-peak-list.svg
tests/testthat/_snaps/pipeline/plot-peak-table.svg
tests/testthat/_snaps/pipeline/plot-peaklist.svg
tests/testthat/_snaps/pipeline/plot-ptw-list.svg
tests/testthat/_snaps/pipeline/plot-purity.svg
tests/testthat/_snaps/pipeline/plot-spectrum-ggplot.svg
tests/testthat/_snaps/pipeline/plot-spectrum-plotly.svg
tests/testthat/_snaps/pipeline/plot-spectrum.svg
tests/testthat/_snaps/pipeline/plot-trace-ggplot.svg
tests/testthat/_snaps/pipeline/plot-trace-plotly.svg
tests/testthat/_snaps/pipeline/ptw-alignment.svg
tests/testthat/_snaps/pipeline/vpdtw-alignment.svg
tests/testthat/helper-plotly.R
tests/testthat/test-pipeline.R
tests/testthat/test-utility-functions.R
vignettes/.gitignore
vignettes/articles/FAQ.Rmd
vignettes/articles/GC-FID.qmd
vignettes/articles/fid_article.bib
vignettes/articles/images/PEXC_multiple_adults_on_nest_c.png
vignettes/articles/images/fuscatus.jpeg
vignettes/articles/images/p_metricus_c.jpeg
vignettes/articles/images/pdom_pipe_c.jpg
vignettes/articles/uv_spectra.Rmd
vignettes/chromatographR.Rmd
vignettes/references.bib
