Man pages for ethanbass/chromatographR
Chromatographic Data Analysis Toolset
| attach_metadata | Attach experimental metadata |
| attach_ref_spectra | Attach reference spectra |
| boxplot.peak_table | Make boxplot from peak table. |
| chromatographR-package | chromatographR |
| cluster_spectra | Cluster spectra |
| combine_peaks | Combine peaks |
| correct_peaks | Correct peak positions according to a PTW warping model |
| correct_rt | Correct retention time |
| filter_peaks | Filter peak lists |
| filter_peaktable | Filter peak table |
| find_peaks | Find peaks |
| fit_peaks | Fit chromatographic peaks to an exponential-gaussian hybrid... |
| get_agilent_threshold | Calculate purity thresholds |
| get_lambdas | Get lambdas |
| get_peaks | Get peak list. |
| get_peaktable | Convert peak list into an ordered peak table. |
| get_purity | Calculate mean peak purity |
| get_times | Get retention times |
| merge_peaks | Merge split peaks |
| mirror_plot | Make mirror plot from peak table. |
| normalize_data | Normalize peak table or chromatograms |
| pk_tab | Goldenrod peak table |
| plot_all_spectra | Plot all spectra for chosen peak. |
| plot_chroms | Plot traces from list of chromatograms. |
| plot.peak_list | Plot fitted peak shapes. |
| plot.peak_table | Plot spectrum from peak table |
| plot.ptw_list | Plot PTW alignments |
| plot_spectrum | Plot spectrum from peak table |
| preprocess | Preprocess time/wavelength data |
| reexports | Read chromatograms. |
| reshape_chroms | Reshape chromatograms Reshapes a list of chromatograms from... |
| reshape_peaktable | Reshapes peak table from wide to long format |
| Sa | Raw goldenrod root chromatograms |
| Sa_pr | Preprocessed goldenrod root chromatograms |
| Sa_warp | Warped goldenrod root chromatograms. |
| scan_chrom | Plot spectra by clicking on the chromatogram |
| subset.peak_table | Subset peak table |
| trim_peak | Trim peak |
| write_peaktable | Export peak table |
