Files in fernandoPalluzzi/SEMgraph
Network Analysis and Causal Inference Through Structural Equation Modeling

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/ALSdata.R R/keggInteractome.R R/keggPathways.R R/sachs.R R/semCluster.R R/semFit.R R/semLearn.R R/semPaths.R R/semTools.R R/semUtils.R README.md SEMbap/README.md

SEMbap/brca.RData

SEMbap/csv/results_dense_100_final.csv

SEMbap/csv/results_dense_400_final.csv

SEMbap/csv/results_sparse_100_final.csv

SEMbap/csv/results_sparse_400_final.csv

SEMbap/help.R SEMbap/main_real.R SEMbap/main_sim.R

SEMbap/trrust_rawdata.human.txt

SEMdag/DLiNGAM_p.R SEMdag/Help.R SEMdag/Main_SEMdag.R SEMdag/README.md

SEMdag/data/.DS_Store

SEMdag/data/als/.DS_Store

SEMdag/data/als/GSE153960_SE.RData

SEMdag/data/brca/.DS_Store

SEMdag/data/brca/brcatest_SE.RData

SEMdag/data/brca/brcatrain_SE.RData

SEMdag/data/covid19/.DS_Store

SEMdag/data/covid19/GSE152641_SE.RData

SEMdag/data/covid19/GSE157103_SE.RData

SEMdag/data/stemi/.DS_Store

SEMdag/data/stemi/GSE59867_SE_new.RData

SEMdag/data/stemi/GSE62646_SE_new.RData

SEMdag/direct_lingam_funcs.cpp

SEMgraph.Rproj

SEMgraph.pdf

SEMgsa_replication/Data/GSE172114_rsem_gene_count_matrix_TMM_69samples.csv

SEMgsa_replication/Data/GSE172114_series_matrix.txt.gz

SEMgsa_replication/R/Help.R SEMgsa_replication/R/Main_sim.R SEMgsa_replication/R/Main_true.R SEMgsa_replication/README.md SEMgsa_replication/README.pdf

SEMgsa_replication/SEMgsa_replicationCode.txt

SEMtree/README.md SEMtree/README.pdf

SEMtree/data/C0206750_disease_gda_summary.tsv

SEMtree/data/GA_result.Rdata

SEMtree/data/GOres.txt

SEMtree/data/GSE172114_rsem_gene_count_matrix_TMM_69samples.csv

SEMtree/data/GSE172114_series_matrix.txt.gz

SEMtree/data/cdat.tab

SEMtree/data/ijmsv19p0402s2.xlsx

SEMtree/data/rdat.tab

SEMtree/data/xdat.tab

SEMtree/graph/BioNet.graph

SEMtree/graph/COSINE.graph

SEMtree/graph/KEGGCovid19.graph

SEMtree/graph/ST.graph

SEMtree/graph/STcfa.graph

SEMtree/graph/STcov.graph

SEMtree/graph/STone.graph

SEMtree/graph/STr2z.graph

SEMtree/graph/STr2zN.graph

SEMtree/graph/STsem.graph

SEMtree/graph/WalktrapGM.graph

SEMtree/graph/WalktrapGMl.graph

SEMtree/graph/pathfindeR.graph

SEMtree/graph/tree_base.graph

SEMtree/help_tree.R SEMtree/tree_bench.R SEMtree/tree_comparison.R SEMtree/tree_sim.R

data/ALSdata.RData

data/kegg.RData

data/kegg.pathways.RData

data/sachs.RData

docs/404.html

docs/README.md

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/figures/Figure1.png

docs/figures/Figure2.png

docs/figures/Figure3.png

docs/figures/Figure5.png

docs/figures/SEMgraph_workflow.png

docs/figures/Supplementary_Figure1.png

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

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docs/reference/Shipley.test.html

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docs/reference/clusterScore.html

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loadPathwayData.R man/SEMace.Rd man/SEMbap.Rd man/SEMdag.Rd man/SEMdci.Rd man/SEMgsa.Rd man/SEMpath.Rd man/SEMrun.Rd man/SEMtree.Rd man/Shipley.test.Rd man/alsData.Rd man/ancestry.Rd man/clusterGraph.Rd man/clusterScore.Rd man/colorGraph.Rd man/cplot.Rd man/dagitty2graph.Rd man/extractClusters.Rd man/factor.analysis.Rd man/gplot.Rd man/graph2dag.Rd man/graph2dagitty.Rd man/graph2lavaan.Rd man/kegg.Rd man/kegg.pathways.Rd man/lavaan2graph.Rd man/localCI.test.Rd man/mergeNodes.Rd man/modelSearch.Rd man/orientEdges.Rd man/pairwiseMatrix.Rd man/parameterEstimates.Rd man/pathFinder.Rd man/properties.Rd man/resizeGraph.Rd man/sachs.Rd man/summary.GGM.Rd man/summary.RICF.Rd man/transformData.Rd man/weightGraph.Rd replicationCode.R

fernandoPalluzzi/SEMgraph documentation built on Feb. 20, 2025, 4:27 p.m.

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fernandoPalluzzi/SEMgraph
Network Analysis and Causal Inference Through Structural Equation Modeling

Files in fernandoPalluzzi/SEMgraph
Network Analysis and Causal Inference Through Structural Equation Modeling

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fernandoPalluzzi/SEMgraph Network Analysis and Causal Inference Through Structural Equation Modeling

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fernandoPalluzzi/SEMgraph
Network Analysis and Causal Inference Through Structural Equation Modeling

Files in fernandoPalluzzi/SEMgraph
Network Analysis and Causal Inference Through Structural Equation Modeling