| addZeroCatch | Adds zeros for catches of species not collected in some... |
| ageBias | Compute and view possible differences between paired sets of... |
| agePrecision | Compute measures of precision among sets of ages. |
| alkAgeDist | Proportions-at-age from an age-length key |
| alkIndivAge | Use an age-length key to assign age to individuals in the... |
| alkMeanVar | Mean Values-at-age from an age-length key |
| alkPlot | Plots to visualize age-length keys. |
| binCI | Confidence intervals for binomial probability of success. |
| BluegillJL | Capture histories (2 samples) of Bluegill from Jewett Lake,... |
| boot | Associated S3 methods for bootstrap results from car::Boot. |
| BrookTroutTH | Catch-at-age for Tobin Harbor, Isle Royale Brook Trout. |
| capFirst | Capitalizes the first letter of first or all words in a... |
| capHistConvert | Convert between capture history data.frame formats. |
| capHistSum | Summarize capture histories in individual fish format. |
| catchCurve | Mortality estimates from the descending limb of a catch... |
| chapmanRobson | Computes Chapman-Robson estimates of S and Z. |
| ChinookArg | Lengths and weights for Chinook Salmon from three locations... |
| CodNorwegian | Stock and recruitment data for Norwegian cod, 1937-1960. |
| col2rgbt | Converts an R color to RGB (red/green/blue) including a... |
| CutthroatAL | Capture histories (9 samples) of Cutthroat Trout from Auke... |
| depletion | Computes the Leslie or DeLury population estimate from catch... |
| dunnTest | Dunn's Kruskal-Wallis Multiple Comparisons. |
| Ecoli | Population growth of Escherichia coli. |
| expandCounts | Repeat individual fish data (including lengths) from tallied... |
| expandLenFreq | Expands a length frequency based on a subsample. |
| extraTests | Likelihood ratio and extra sum-of-squares tests. |
| fact2num | Converts "numeric" factor levels to numeric values. |
| findGrowthStarts | Find reasonable starting values for common fish growth... |
| fishR | Opens web pages associated with the fishR website. |
| FSA | Fisheries stock assessment methods and data. |
| FSA-defunct | DEFUNCT functions. |
| FSA-internals | Internal functions. |
| geomean | Calculates the geometric mean or geometric standard... |
| GrowthData1 | Hypothetical growth data for testing |
| GrowthData2 | Hypothetical growth data for testing seasonal age models. |
| GrowthData3 | Hypothetical growth data for testing |
| growthModels | DEPRECATED (as of v0.10.0). Creates a function for a specific... |
| headtail | Shows rows from the head and tail of a data frame or matrix. |
| hist.formula | Creates separate histograms by levels. |
| histFromSum | Create a histogram from a frequency table. |
| hyperCI | Confidence interval for population size (N) in hypergeometric... |
| is.odd | Determine if a number is odd or even. |
| knitUtil | Specific utilities for use in a knitr document. |
| ksTest | Kolmogorov-Smirnov Tests. |
| lagratio | Ratio of lagged observations. |
| lencat | Constructs length class/category variable. |
| logbtcf | Constructs the correction-factor used when back-transforming... |
| lwCompPreds | Constructs plots of predicted weights at given lengths among... |
| makeGrowthFun | Creates a function for a specific parameterization of the von... |
| metaM | Estimate natural mortality from a variety of empirical... |
| Mirex | Mirex concentration, weight, capture year, and species of... |
| mrClosed | Estimate initial population size for single or multiple... |
| mrOpen | Jolly-Seber analysis from multiple mark-recapture events from... |
| nlsBoot | Associated S3 methods for nlsBoot from nlstools. |
| nlsTracePlot | Adds model fits from nls iterations to active plot. |
| peek | Peek into (show a subset of) a data frame or matrix. |
| perc | Computes the percentage of values in a vector less than or... |
| PikeNY | Summarized multiple mark-recapture data for all Northern Pike... |
| PikeNYPartial1 | Capture histories (4 samples), in capture history format, of... |
| plotAB | Construct traditional (Campana-like) age-bias plots. |
| poiCI | Confidence interval for Poisson counts. |
| psdAdd | Creates a vector of Gabelhouse lengths for each species in an... |
| psdCalc | Convenience function for calculating PSD-X and PSD X-Y... |
| psdCI | Compute confidence intervals for PSD-X and PSD X-Y values. |
| PSDlit | Gabelhouse five-cell length categories for various species. |
| psdPlot | Length-frequency histogram with Gabelhouse lengths... |
| psdVal | Finds Gabelhouse lengths (for PSD calculations) for a... |
| rcumsum | Computes the prior to or reverse cumulative sum of a vector. |
| removal | Population estimates for k-, 3-, or 2-pass removal data. |
| repeatedRows2Keep | Find non-repeated consecutive rows in a data.frame. |
| rSquared | Extract the coefficient of determination from a linear model... |
| se | Computes standard error of the mean. |
| showGrowthFun | Creates a string or an expression for a specific growth... |
| SMBassLS | Catch-effort data for Little Silver Lake (Ont) Smallmouth... |
| SMBassWB | Growth increment data for West Bearskin Lake, MN, Smallmouth... |
| SpotVA1 | Age and length of spot. |
| srFuns | Creates a function for a specific parameterization of a... |
| srStarts | Finds reasonable starting values for parameters in specific... |
| Summarize | Summary statistics for a numeric variable. |
| sumTable | Creates a one- or two-way table of summary statistics. |
| tictactoe | Construct a base tic-tac-toe plot for presenting... |
| validn | Finds the number of valid (non-NA) values in a vector. |
| vbStarts | Find reasonable starting values for a von Bertalanffy growth... |
| WhitefishLC | Assigned ages from two readers on three structures for Lake... |
| WR79 | Ages and lengths for a hypothetical sample from Westerheim... |
| wrAdd | Computes a vector of relative weights specific to a species... |
| WSlit | All known standard weight equations. |
| wsVal | Finds standard weight equation coefficients for a particular... |
