Files in fkeck/bioseq
A Toolbox for Manipulating Biological Sequences
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/as_DNAbin.R
R/as_seqinr.R
R/as_tibble.R
R/bioseq-package.R
R/checks_validation.R
R/data.R
R/def_aa.R
R/def_dna.R
R/def_rna.R
R/dictionaries.R
R/genetic_codes.R
R/gui_wrappers.R
R/internals.R
R/print_format.R
R/read_write_fasta.R
R/seq_biological_operations.R
R/seq_fuzzy_operations.R
R/seq_misc_operations.R
R/seq_stat_operations.R
R/seq_string_operation.R
R/seq_summarize_operations.R
R/zzz.R
README.md
_pkgdown.yml
bioseq.Rproj
codecov.yml
data/fragilaria.rda
docs/404.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/f_pararumpens.png
docs/articles/index.html
docs/articles/intro-bioseq.html
docs/articles/intro-bioseq_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/ref_database.html
docs/articles/ref_database_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/ref_database_files/figure-html/unnamed-chunk-14-1.png
docs/articles/ref_database_files/figure-html/unnamed-chunk-17-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/logo.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/aa.html
docs/reference/aliview.html
docs/reference/alphabets.html
docs/reference/as-tibble-ape.html
docs/reference/as-tibble-bioseq.html
docs/reference/as_AAbin.html
docs/reference/as_AAbin.tbl_df.html
docs/reference/as_DNAbin.html
docs/reference/as_DNAbin.tbl_df.html
docs/reference/as_aa.html
docs/reference/as_dna.html
docs/reference/as_rna.html
docs/reference/as_seqinr_alignment.html
docs/reference/bioseq-package.html
docs/reference/dic_genetic_codes.html
docs/reference/dna.html
docs/reference/figures/bioseq_bio_op.gddraw
docs/reference/figures/bioseq_bio_op.pdf
docs/reference/figures/bioseq_format_fig.gddraw
docs/reference/figures/bioseq_formats_fig.pdf
docs/reference/figures/logo.png
docs/reference/figures/logo.svg
docs/reference/figures/old_bioseq_fig.gddraw
docs/reference/fragilaria.html
docs/reference/genetic-codes.html
docs/reference/index.html
docs/reference/internal-methods.html
docs/reference/is_aa.html
docs/reference/is_dna.html
docs/reference/is_rna.html
docs/reference/new_aa.html
docs/reference/new_dna.html
docs/reference/new_rna.html
docs/reference/pillar_shaft.bioseq_aa.html
docs/reference/pillar_shaft.bioseq_dna.html
docs/reference/pillar_shaft.bioseq_rna.html
docs/reference/read_fasta.html
docs/reference/rev_complement.html
docs/reference/rna.html
docs/reference/seaview.html
docs/reference/seq-replace.html
docs/reference/seq_cluster.html
docs/reference/seq_combine.html
docs/reference/seq_consensus.html
docs/reference/seq_count_pattern.html
docs/reference/seq_crop_pattern.html
docs/reference/seq_crop_position.html
docs/reference/seq_detect_pattern.html
docs/reference/seq_disambiguate_IUPAC.html
docs/reference/seq_extract_pattern.html
docs/reference/seq_extract_position.html
docs/reference/seq_nchar.html
docs/reference/seq_nseq.html
docs/reference/seq_remove_pattern.html
docs/reference/seq_remove_position.html
docs/reference/seq_replace_position.html
docs/reference/seq_rev_translate.html
docs/reference/seq_spellout.html
docs/reference/seq_split_kmer.html
docs/reference/seq_split_pattern.html
docs/reference/seq_stat_gc.html
docs/reference/seq_stat_prop.html
docs/reference/seq_translate.html
docs/reference/transcription.html
docs/reference/validate_seq.html
docs/reference/write_fasta.html
docs/sitemap.xml
inst/CITATION
man/aa.Rd
man/aliview.Rd
man/alphabets.Rd
man/as-tibble-ape.Rd
man/as-tibble-bioseq.Rd
man/as_AAbin.Rd
man/as_AAbin.tbl_df.Rd
man/as_DNAbin.Rd
man/as_DNAbin.tbl_df.Rd
man/as_aa.Rd
man/as_dna.Rd
man/as_rna.Rd
man/as_seqinr_alignment.Rd
man/bioseq-package.Rd
man/dic_genetic_codes.Rd
man/dna.Rd
man/figures/bioseq_bio_op.gddraw
man/figures/bioseq_bio_op.pdf
man/figures/bioseq_format_fig.gddraw
man/figures/bioseq_formats_fig.pdf
man/figures/logo.png
man/figures/logo.svg
man/figures/old_bioseq_fig.gddraw
man/fragilaria.Rd
man/genetic-codes.Rd
man/internal-methods.Rd
man/is_aa.Rd
man/is_dna.Rd
man/is_rna.Rd
man/new_aa.Rd
man/new_dna.Rd
man/new_rna.Rd
man/pillar_shaft.bioseq_aa.Rd
man/pillar_shaft.bioseq_dna.Rd
man/pillar_shaft.bioseq_rna.Rd
man/read_fasta.Rd
man/rev_complement.Rd
man/rna.Rd
man/seaview.Rd
man/seq-replace.Rd
man/seq_cluster.Rd
man/seq_combine.Rd
man/seq_consensus.Rd
man/seq_count_pattern.Rd
man/seq_crop_pattern.Rd
man/seq_crop_position.Rd
man/seq_detect_pattern.Rd
man/seq_disambiguate_IUPAC.Rd
man/seq_extract_pattern.Rd
man/seq_extract_position.Rd
man/seq_nchar.Rd
man/seq_nseq.Rd
man/seq_remove_pattern.Rd
man/seq_remove_position.Rd
man/seq_replace_position.Rd
man/seq_rev_translate.Rd
man/seq_spellout.Rd
man/seq_split_kmer.Rd
man/seq_split_pattern.Rd
man/seq_stat_gc.Rd
man/seq_stat_prop.Rd
man/seq_translate.Rd
man/transcription.Rd
man/validate_seq.Rd
man/write_fasta.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/example_fasta_RNA.fasta
tests/testthat/example_fasta_header.fasta
tests/testthat/example_fasta_multi.fasta
tests/testthat/example_fasta_multi_chevron.fasta
tests/testthat/example_fasta_protein.fasta
tests/testthat/example_fasta_single.fasta
tests/testthat/test-class-aa.R
tests/testthat/test-class-dna.R
tests/testthat/test-class-rna.R
tests/testthat/test-coercion.R
tests/testthat/test-gui.R
tests/testthat/test-internal-checks.R
tests/testthat/test-op-biological.R
tests/testthat/test-op-misc.R
tests/testthat/test-op-stat.R
tests/testthat/test-op-string.R
tests/testthat/test-op-summarize.R
tests/testthat/test-print-methods.R
tests/testthat/test-read-write-fasta.R
vignettes/.gitignore
vignettes/f_pararumpens.png
vignettes/intro-bioseq.Rmd
vignettes/ref_database.Rmd
