Man pages for florale/multilevelcoda
Estimate Bayesian Multilevel Models for Compositional Data
| as.data.frame.complr | Extract Compositional Data from 'complr' object. |
| bayes_factor.brmcoda | Bayes Factors from Marginal Likelihoods |
| brmcoda | Fit Bayesian generalised (non-)linear multilevel... |
| bsub | Between-person Simple Substitution |
| bsubmargins | Between-person Average Substitution |
| build.basesub | Build Base Pairwise Substitution |
| build.rg | Reference Grid for 'substitution' model. |
| build.sbp | Build Sequential Binary Partition |
| coef.brmcoda | Model Coefficients |
| compilr | Indices from a (dataset of) Multilevel Composition(s)... |
| complr | Indices from a (dataset of) Multilevel Composition(s) |
| create_substitution | Constructor function for 'substitution' class. |
| diagnostic-quantities-brmcoda | Extract Diagnostic Quantities from 'brmsfit' Models in... |
| draws-index-brmcoda | Index 'brmcoda' objects |
| fitted.brmcoda | Expected Values of the Posterior Predictive Distribution |
| fixef.brmcoda | Population-Level Estimates |
| get-substitution | Helper functions used only internally to estimate... |
| is.brmcoda | Checks if argument is a 'brmcoda' object |
| is.complr | Checks if argument is a 'complr' object |
| is.substitution | Checks if argument is a 'substitution' object |
| launch_shinystan.brmcoda | Interface to 'shinystan' |
| loo.brmcoda | Efficient approximate leave-one-out cross-validation (LOO) |
| mcmc_plot.brmcoda | MCMC Plots Implemented in 'bayesplot' |
| mcompd | Multilevel Compositional Data |
| mean.complr | Mean amounts and mean compositions presented in a 'complr'... |
| model.frame.brmcoda | Extracting the Model Frame from a Formula or Fit from... |
| multilevelcoda_sim | multilevelcoda Simulation Study Results |
| nobs.brmcoda | Extract Number of Observations from 'brmcoda' object |
| pairs.brmcoda | Create a matrix of output plots from a 'brmcoda"s 'brmsfit'... |
| pivot_coord | Estimate pivot balance coordinates |
| pivot_coord_refit | Estimate pivot balance coordinates by refitting model. |
| pivot_coord_rotate | Estimate pivot balance coordinates by rotating sequential... |
| plot.brmcoda | Trace and Density Plots for MCMC Draws plot |
| plot.substitution | Substitution Plot |
| pp_check.brmcoda | Posterior Predictive Checks for 'brmcoda' Objects |
| predict.brmcoda | Draws from the Posterior Predictive Distribution |
| print.brmcoda | Print a Summary for a fitted 'brmsfit' model in a 'brmcoda'... |
| print.complr | Print a Summary for a 'complr' object |
| print.substitution | Print a Summary for a 'substitution' object |
| print.summary.complr | Summary for a 'complr' object |
| prior_summary.brmcoda | Extract Priors of a 'brmsfit' from a 'brmcoda' object |
| psub | Possible Pairwise Substitutions |
| ranef.brmcoda | Group-Level Estimates |
| residuals.brmcoda | Posterior Draws of Residuals/Predictive Errors |
| sbp | Sequential Binary Partition |
| sim | multilevelcoda Simulation Study results |
| sub | Simple Substitution |
| submargins | Average Substitution |
| substitution | Multilevel Compositional Substitution Analysis |
| summary.brmcoda | Create a Summary of a fitted 'brmsfit' model in a 'brmcoda'... |
| summary.complr | Create a Summary of a 'complr' object |
| summary.pivot_coord | Create a Summary of a fitted 'brmsfit' model from a... |
| summary.substitution | Create a Summary of a Substitution Model represented by a... |
| update.brmcoda | Update 'brmcoda' models |
| update.complr | Update 'complr' |
| var.complr | Variance of compositions presented in a 'complr' object. |
| VarCorr.brmcoda | Extract Variance and Correlation Components |
| vcov.brmcoda | Covariance and Correlation Matrix of Population-Level Effects |
| wsub | Within-person Simple Substitution |
| wsubmargins | Within-person Average Substitution |
