API for flow-r/flowr
Streamlining Design and Deployment of Complex Workflows
| Global functions | |
|---|---|
| .create_jobs_mat | Source code |
| .create_queue_cmd | Source code |
| .onAttach | Source code |
| .onDeatch | Source code |
| .onLoad | Source code |
| .plot_flow_dat_type1 | Source code |
| .plot_flow_dat_type2 | Source code |
| .run | Source code |
| .run_sleep | Source code |
| .summarize_flow_det | Source code |
| .to_flowmat.character | Source code |
| arrange_flowdef | Source code |
| as.flowdef | Man page Source code |
| as.flowmat | Man page Source code |
| assert_args_not_null | Source code |
| assert_character | Source code |
| assert_flowdef | Source code |
| assert_flowmat | Source code |
| assert_not_null | Source code |
| assert_status | Source code |
| assert_version | Source code |
| avail_pipes | Source code |
| calc_arrows | Source code |
| calc_boxdim | Source code |
| calc_fontsize | Source code |
| calc_shadowsize | Source code |
| check | Man page Source code |
| check.flowdef | Man page Source code |
| check.flowmat | Man page Source code |
| check_args | Man page Source code |
| check_dep_sub_type | Source code |
| cmds | Source code |
| cmds_to_flow | Source code |
| create_flow_det | Source code |
| create_jobs_mat | Man page Source code |
| definition | Man page |
| detect_dep_type | Source code |
| detect_kill_cmd | Source code |
| detect_redo | Source code |
| detect_stat_cmd | Source code |
| detect_sub_type | Source code |
| display_mat | Source code |
| dots | Source code |
| dump_flow_helpers | Source code |
| error | Man page Source code |
| fetch | Man page Source code |
| fetch_conf | Man page Source code |
| fetch_pipes | Man page Source code |
| final_status | Source code |
| flow | Man page Source code |
| flow-class | Man page |
| flowdef | Man page |
| flowopts | Man page |
| flowr | Man page |
| generate_flow_code | Man page Source code |
| get_opts | Man page Source code |
| get_resources | Man page Source code |
| get_resources_lsf | Man page Source code |
| get_samplename | Source code |
| get_status | Man page Source code |
| get_status.character | Man page Source code |
| get_status.data.frame | Man page Source code |
| get_status.flow | Man page Source code |
| get_unique_id | Man page Source code |
| get_wds | Man page Source code |
| guess_sub_dep | Source code |
| is.flow | Man page Source code |
| is.flowdef | Man page Source code |
| is.flowmat | Man page Source code |
| job | Man page Source code |
| jobnames | Source code |
| kill | Man page Source code |
| kill.character | Man page Source code |
| kill.flow | Man page Source code |
| kill_flow | Source code |
| limit_runs | Source code |
| load | Source code |
| load_opts | Man page Source code |
| load_pipe | Source code |
| opts_flow | Man page |
| opts_flow$get | Man page |
| opts_flow$load | Man page |
| opts_flow$set | Man page |
| parse_jobids | Source code |
| parse_lsf_out | Source code |
| parse_prevjobids | Source code |
| plot | Man page |
| plot.flow | Man page |
| plot.flowdef | Man page |
| plot_flow | Man page Source code |
| plot_flow.character | Man page Source code |
| plot_flow.flow | Man page Source code |
| plot_flow.flowdef | Man page Source code |
| plot_flow.list | Man page Source code |
| prevjob_exists | Source code |
| proc_jobs | Source code |
| queue | Man page Source code |
| queue-class | Man page |
| read_flow_detail_fl | Source code |
| read_fobj | Source code |
| render_dependency | Source code |
| render_dependency.local | Source code |
| render_dependency.lsf | Source code |
| render_dependency.moab | Source code |
| render_dependency.sge | Source code |
| render_dependency.slurm | Source code |
| render_dependency.torque | Source code |
| render_queue_cmd | Source code |
| replace_slots | Man page Source code |
| rerun | Man page Source code |
| rerun.character | Man page Source code |
| rerun.flow | Man page Source code |
| run | Man page Source code |
| run_flow | Man page |
| run_local | Source code |
| run_pipe | Man page |
| run_pipe_v2 | Man page Source code |
| search_conf | Source code |
| set_opts | Man page Source code |
| setup | Man page Source code |
| slots_as_list | Source code |
| split_multi_dep | Source code |
| status | Man page Source code |
| status_cat | Source code |
| status_run | Source code |
| submit_flow | Man page Source code |
| submit_flow.flow | Man page Source code |
| submit_flow.list | Man page Source code |
| submit_job | Man page |
| submit_run | Man page Source code |
| subset_fdef | Source code |
| subset_fdet | Source code |
| subset_fmat | Source code |
| subset_mods | Source code |
| summarize_flow_det | Source code |
| test_queue | Man page Source code |
| to_df.status | Man page Source code |
| to_flow | Man page Source code |
| to_flow.character | Man page Source code |
| to_flow.data.frame | Man page Source code |
| to_flow.flowmat | Man page Source code |
| to_flow.list | Man page Source code |
| to_flowdef | Man page Source code |
| to_flowdef.character | Man page Source code |
| to_flowdef.flow | Man page Source code |
| to_flowdef.flowmat | Man page Source code |
| to_flowdet | Man page Source code |
| to_flowdet.character | Man page Source code |
| to_flowdet.flow | Man page Source code |
| to_flowdet.job | Source code |
| to_flowdet.rootdir | Man page Source code |
| to_flowmat | Man page Source code |
| to_flowmat.character | Source code |
| to_flowmat.data.frame | Man page Source code |
| to_flowmat.flow | Man page Source code |
| to_flowmat.list | Man page Source code |
| update.flow | Man page Source code |
| update_flow_det | Source code |
| verbose | Man page |
| whisker_render | Man page Source code |
| write_flow_detail_fl | Source code |
| write_flow_details | Man page Source code |
| write_flow_status_fl | Source code |
