API for fmicompbio/swissknife
Handy code shared in the FMI CompBio group
| Global functions | |
|---|---|
| .alignWindowsToGenome | Source code |
| .assertPackagesAvailable | Source code |
| .assertScalar | Source code |
| .assertVector | Source code |
| .getChrlenFromBowtieIndex | Source code |
| .getDistMat | Man page Source code |
| .isValidColor | Man page Source code |
| .message | Source code |
| .writeWindowsToTempFile | Source code |
| .writeWindowsToTempFileCPP | Source code |
| addUtilsFunctions | Man page Source code |
| annotateRegions | Man page Source code |
| calcAndCountDist | Man page Source code |
| calcPhasogram | Man page Source code |
| col2hex | Man page Source code |
| estimateNRL | Man page Source code |
| getGenomicTiles | Man page Source code |
| getInsertSizeDistFromBam | Man page Source code |
| getMappableRegions | Man page Source code |
| labelCells | Man page Source code |
| loadExampleData | Man page Source code |
| normGenesetExpression | Man page Source code |
| parsePkgVersions | Man page Source code |
| plotBitScatter | Man page Source code |
| plotGeneRegion | Man page Source code |
| plotPhasogram | Man page Source code |
| plotSelVarGenes | Man page Source code |
| prepareGTF | Man page Source code |
| readSampleTsvs | Man page Source code |
| sampleControlElements | Man page Source code |
| selVarGenes | Man page Source code |
| specificityScore | Man page |
| specificityScore,SummarizedExperiment-method | Man page |
| specificityScore,matrix-method | Man page |
| swissknife | Man page |
| swissknife-package | Man page |
| valueToColor | Man page Source code |
| weightedMeanByID | Man page Source code |
