Files in fmicompbio/swissknife

Handy code shared in the FMI CompBio group

LICENSE.md NEWS.md R/RcppExports.R R/addUtilsFunctions.R R/annotateRegions.R R/cellLabeling.R R/col2hex.R R/getGenomicTiles.R R/getInsertSizeDistFromBam.R R/getMappableRegions.R R/loadExampleData.R R/parsePkgVersions.R R/phasograms.R R/plotBitScatter.R R/plotGeneRegion.R R/readSampleTsvs.R R/sampleControlElements.R R/selVarGenes.R R/swissknife.R R/tissue_specificity_score.R R/utils.R R/valueToColor.R R/weightedMeanByID.R README.md inst/extdata/parsePkgVersions/example.md inst/templates/tests_utils_template.R inst/templates/utils_template.R man/addUtilsFunctions.Rd man/annotateRegions.Rd man/calcAndCountDist.Rd man/calcPhasogram.Rd man/col2hex.Rd man/dot-getDistMat.Rd man/dot-isValidColor.Rd man/estimateNRL.Rd man/getGenomicTiles.Rd man/getInsertSizeDistFromBam.Rd man/getMappableRegions.Rd man/labelCells.Rd man/loadExampleData.Rd man/normGenesetExpression.Rd man/parsePkgVersions.Rd man/plotBitScatter.Rd man/plotGeneRegion.Rd man/plotPhasogram.Rd man/plotSelVarGenes.Rd man/prepareGTF.Rd man/readSampleTsvs.Rd man/sampleControlElements.Rd man/selVarGenes.Rd man/specificityScore-methods.Rd man/swissknife-package.Rd man/valueToColor.Rd man/weightedMeanByID.Rd tests/testthat.R tests/testthat/setup_test_environment.R tests/testthat/test_annotateRegions.R tests/testthat/test_cell_labeling.R tests/testthat/test_col2hex.R tests/testthat/test_getGenomicTiles.R tests/testthat/test_getInsertSizeDistFromBam.R tests/testthat/test_getMappableRegions.R tests/testthat/test_loadExampleData.R tests/testthat/test_parsePkgVersions.R tests/testthat/test_phasograms.R tests/testthat/test_plotBitScatter.R tests/testthat/test_plotGeneRegion.R tests/testthat/test_readSampleTsvs.R tests/testthat/test_sampleControlElements.R tests/testthat/test_selVarGenes.R tests/testthat/test_tissue_specificity_score.R tests/testthat/test_utils.R tests/testthat/test_utils_template.R tests/testthat/test_valueToColor.R tests/testthat/test_weightedMeanByID.R