| ancestry-class | ancestry - class definition |
| Fitness | Fitness: F(X) |
| generateGenerationFirst | generateGenerationFirst |
| Generate_tree | Generate_tree |
| generation | generation |
| GenFiltMask | SGenFiltMask |
| god | god |
| lineage-class | lineage - class definition |
| mat2rle | mat2rle |
| mat2rle_2 | mat2rle |
| Mutation | Mutation |
| organism-class | organism - class definition |
| plotFitness | plotFitness |
| Pl_pc | Plot population compositon: Pl_pc() |
| popMutation | mutation |
| population-class | population - class definition |
| rec_anc | Record Ancestry: rec_anc |
| rle2mat | rle2mat |
| Selection | Selection: Sel(X) |
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