Man pages for fseaton/jsdmstan
Fitting jSDMs in Stan
| corrplot | Plot modelled correlations between species |
| envplot | Plotting environmental effects on species |
| extract.jsdmStanFit | Extract samples from jsdmStanFit object |
| jsdm_prior | Create prior object for jsdmstan models and data simulation |
| jsdm_sim_data | Generate simulated data within a variety of jSDM... |
| jsdm_stancode | Make stancode for the jsdm model |
| jsdmstan-extractors | Extract quantities useful for model summaries |
| jsdmStanFamily | jsdmStanFamily class |
| jsdmStanFit | jsdmStanFit class |
| jsdmstan-package | The 'jsdmstan' package. |
| jsdm_statsummary | Extract site- or species-level summary statistics for... |
| loo.jsdmStanFit | Efficient approximate leave-one-out cross-validation using... |
| mcmc_plot.jsdmStanFit | MCMC plots implemented in 'bayesplot' |
| multi_pp_check | Multiple pp_check plots per species |
| ordiplot | Plotting an ordination plot for a GLLVM model |
| pinewood | Vegetation data from native pinewoods in Scotland, 1971 |
| pinewood_env | Environmental data from native pinewoods in Scotland, 1971 |
| plot.jsdmStanFit | Plot the traceplots and density plots for parameters within a... |
| posterior_linpred.jsdmStanFit | Access the posterior distribution of the linear predictor |
| posterior_predict.jsdmStanFit | Draw from the posterior predictive distribution |
| posterior_zipred | Access the posterior distribution of the linear predictor for... |
| pp_check.jsdmStanFit | Posterior predictive checks for 'jsdmStanFit' objects |
| print.jsdmStanFamily | Print jsdmStanFamily object |
| print.jsdmStanFit | Print the default summary for the model |
| sim_helpers | Helper functions for simulating data |
| stan_gllvm | Alias for 'stan_jsdm' with 'method = "gllvm"' |
| stan_jsdm | Fit jsdm models in Stan |
| stan_mglmm | Alias for 'stan_jsdm' with 'method = "mglmm"' |
| summary.jsdmStanFit | Summarise the model fit and data structure and give summaries... |
| update.jsdmStanFit | Update a jsdmStanFit model object with new data or Stan... |
