Files in g1o/GeneEssentiality
Gene essentiality predictor
DESCRIPTION
NAMESPACE
Plot_model_ROC.R
R/Extract_features.R
R/Join_both.R
R/Select_features.R
R/Serial_gene_features_extraction.R
R/compare_models_with_datasets.R
R/compare_two_datasets.R
R/model_test.R
R/reproduce_bacteria_results.R
R/reproduce_insect_results.R
R/train.R
R/train_xgbt.R
README.md
data/DMEL_2RNAseq.rda
data/DMEL_intrinsic.rda
data/DMEL_intrinsic_with_subcellular.rda
data/SVM_seeds.rda
data/TRIB_2RNAseq.rda
data/TRIB_intrinsic.rda
data/TRIB_intrinsic_with_subcellular.rda
data/dmel_plus_trib_model_importances.rda
data/drosophila_features_nzv.rda
data/nzv_all.rda
data/seed.rda
data/tribolium_features_nzv.rda
inst/extdata/Acinetobacter_baylyi_ADP1_E.faa.gz
inst/extdata/Acinetobacter_baylyi_ADP1_E.fasta.gz
inst/extdata/Acinetobacter_baylyi_ADP1_NE_Fail.faa.gz
inst/extdata/Acinetobacter_baylyi_ADP1_NE_Fail.fasta.gz
inst/extdata/Acinetobacter_baylyi_ADP1_NE_PASS.fasta.gz
inst/extdata/ES_class.csv.gz
inst/extdata/GE.fasta
inst/extdata/GNE.fasta
inst/extdata/Staphylococcus_aureus_NCTC_8325_E.faa.gz
inst/extdata/Staphylococcus_aureus_NCTC_8325_E.fasta.gz
inst/extdata/Staphylococcus_aureus_NCTC_8325_NE_Fail.faa.gz
inst/extdata/Staphylococcus_aureus_NCTC_8325_NE_Fail.fasta.gz
inst/extdata/Staphylococcus_aureus_NCTC_8325_NE_PASS.fasta.gz
inst/extdata/allgenes_longest_Tcastaneum_CDS.fasta.gz
inst/extdata/allgenes_longest_Tcastaneum_protein.fasta.gz
inst/extdata/allgenes_longest_dmelanogaster_CDS.fasta.gz
inst/extdata/allgenes_longest_dmelanogaster_protein.fasta.gz
inst/extdata/cell_level_class.csv.gz
inst/extdata/dmel_essential.fasta.gz
inst/extdata/dmel_nonessential.fasta.gz
inst/extdata/dmel_trib_experiments.R
inst/extdata/noh_dmel_ids.csv
inst/extdata/noh_trib_ids.csv
inst/extdata/trib_essential.fasta.gz
inst/extdata/trib_nonessential.fasta.gz
man/Calc_feats.Rd
man/Extract.Rd
man/Join_datasets.Rd
man/Select.Rd
man/VS_models_plot.Rd
man/compare_two_datasets.Rd
man/reproduce_bacteria_results.Rd
man/reproduce_insect_results.Rd
man/train_rf.Rd
man/train_xgbt.Rd
