Files in gadget-framework/gadget3

Globally-Applicable Area Disaggregated General Ecosystem Toolbox V3

NEWS.md R/aaa_lang.R R/aab_env.R R/action_age.R R/action_grow.R R/action_mature.R R/action_migrate.R R/action_naturalmortality.R R/action_order.R R/action_predate.R R/action_renewal.R R/action_report.R R/action_spawn.R R/action_spmodel.R R/action_tagging.R R/action_time.R R/action_trace.R R/action_weightloss.R R/array_utils.R R/debug_utils.R R/env_dif.R R/eval.R R/formula_utils.R R/headtail.R R/init_val.R R/likelihood_bounds.R R/likelihood_data.R R/likelihood_distribution.R R/likelihood_random.R R/likelihood_sparsesample.R R/likelihood_tagging_ckmr.R R/likelihood_understocking.R R/param_project.R R/params.R R/quota.R R/regression.R R/run.R R/run_desc.R R/run_r.R R/run_tmb.R R/step.R R/stock.R R/stock_age.R R/stock_areas.R R/stock_manual.R R/stock_product.R R/stock_tag.R R/stock_time.R R/suitability.R R/test_utils.R R/timedata.R R/timevariable.R README.md inttest/codegeneration-defaults/model.R inttest/codegeneration-defaults/run.R inttest/codegeneration/ling.R inttest/codegeneration/run.R inttest/maturity-continuous/run.R inttest/maturity/run.R inttest/renewal/run.R inttest/spawn/run.R inttest/understocking/run.R man/aaa_lang.Rd man/aab_env.Rd man/action_age.Rd man/action_grow.Rd man/action_mature.Rd man/action_migrate.Rd man/action_naturalmortality.Rd man/action_order.Rd man/action_predate.Rd man/action_renewal.Rd man/action_report.Rd man/action_spawn.Rd man/action_spmodel.Rd man/action_tagging.Rd man/action_time.Rd man/action_trace.Rd man/action_weightloss.Rd man/array_utils.Rd man/env_dif.Rd man/eval.Rd man/formula_utils.Rd man/init_val.Rd man/language.Rd man/likelihood_bounds.Rd man/likelihood_distribution.Rd man/likelihood_random.Rd man/likelihood_sparsesample.Rd man/likelihood_tagging_ckmr.Rd man/likelihood_understocking.Rd man/param_project.Rd man/params.Rd man/quota.Rd man/run_desc.Rd man/run_r.Rd man/run_tmb.Rd man/step.Rd man/stock.Rd man/stock_age.Rd man/stock_areas.Rd man/stock_tag.Rd man/stock_time.Rd man/suitability.Rd man/timedata.Rd man/timevariable.Rd notes/tmb-gotchas.Rmd tests/test-aab_env.R tests/test-action_age.R tests/test-action_grow-methods.R tests/test-action_grow-weightjones.R tests/test-action_grow.R tests/test-action_mature.R tests/test-action_migrate.R tests/test-action_naturalmortality.R tests/test-action_predate-catchability.R tests/test-action_predate-catchability_project.R tests/test-action_predate-numberfleet.R tests/test-action_predate-predator.R tests/test-action_predate-timebasedsuitability.R tests/test-action_predate.R tests/test-action_renewal-otherfood.R tests/test-action_renewal.R tests/test-action_report.R tests/test-action_spawn-multipleoutputs.R tests/test-action_spawn.R tests/test-action_spmodel.R tests/test-action_tagging.R tests/test-action_time.R tests/test-action_weightloss.R tests/test-array_utils.R tests/test-env_dif.R tests/test-eval.R tests/test-formula_utils.R tests/test-init_val.R tests/test-likelihood_bounds.R tests/test-likelihood_data.R tests/test-likelihood_distribution-surveyindices.R tests/test-likelihood_distribution.R tests/test-likelihood_random.R tests/test-likelihood_sparsesample.R tests/test-likelihood_tagging_ckmr.R tests/test-likelihood_understocking.R tests/test-param_project-ar1.R tests/test-param_project-logar1.R tests/test-param_project.R tests/test-params.R tests/test-quota-assess.R tests/test-quota-hockeyfleet.R tests/test-quota.R tests/test-regression.R tests/test-run.R tests/test-run_r.R tests/test-run_tmb-reporting_enabled.R tests/test-run_tmb.R tests/test-step.R tests/test-stock.R tests/test-stock_age.R tests/test-stock_areas.R tests/test-stock_product.R tests/test-stock_tag.R tests/test-stock_time-fishingyear.R tests/test-stock_time.R tests/test-suitability-report.R tests/test-suitability.R tests/test-timedata.R tests/test-timevariable.R vignettes/incorporating-observation-data.Rmd vignettes/introduction-single-stock.Rmd vignettes/model-customisation.Rmd vignettes/model-debugging.Rmd vignettes/model-structure.Rmd vignettes/multiple-substocks.Rmd vignettes/random-effects.Rmd vignettes/writing_actions.Rmd