Man pages for gauravsk/ecoevoapps
Simulate Dynamics of Ecology/Evolution Models
| assumption_check | check if input parameters violates model(Pulliam 1988)... |
| biotic_competition | Internal function for running the biotic resource competition... |
| ecoevoapps-package | ecoevoapps: Simulate Dynamics of Ecology/Evolution Models |
| exponential_growth | Exponential growth model |
| ibiogeo_E | Extinction rate for Island Biogeography model |
| ibiogeo_Ex | equilibrium extinction rate for Island Biogeography model |
| ibiogeo_I | Immigration rate for Island Biogeography model |
| ibiogeo_Ix | equilibrium immigration rate for Island Biogeography model |
| ibiogeo_Sx | Equilibrium number of species on island for Island... |
| lagged_logistic_growth | Lagged logistic growth model |
| logistic_growth | Logistic growth model |
| lotka_volterra_competition | Lotka-Volterra Competition with carrying capacities |
| lotka_volterra_competition_wo_K | Lotka-Volterra Competition without carrying capacities |
| lv_predprey_logPrey | Run L-V Pred prey model, Type I FR + logistic prey |
| lv_predprey_t1 | Run L-V Pred prey model, Type I Functional Response |
| lv_predprey_t2 | Run L-V Pred prey model, Type II Functional Response |
| make_equilibrium_plot | make equilibrium plot for ibiogeo model |
| make_islands_map | make map for ibiogeo model |
| mutualism | Model of mutualism with saturating functional response |
| mutualism_vector_field | Generate vector field for phase portrait of mutualism model |
| plot_abiotic_comp_portrait | Plot the phase portrait of resources in the abiotic resource... |
| plot_abiotic_comp_time | Plot population size over time for the aboitic resource... |
| plot_biotic_comp_time | Plot population size over time for the boitic resource... |
| plot_continuous_population_growth | Plot the dynamics of a discrete population growth model |
| plot_discrete_population_cobweb | Plot a cobweb digram of a discrete population growth model |
| plot_discrete_population_growth | Plot the dynamics of a discrete population growth model |
| plot_functional_responses | Plot population size over time for the biotic resource... |
| plot_infectiousdisease_portrait | Plot phase portrait for infectious disease model model |
| plot_infectiousdisease_time | Plot phase portrait for infectious disease model model |
| plot_leslie_diagram | Generate diagram of population structure |
| plot_lvcomp_portrait | Generate a phase portrait (N1 vs N2) plot for the... |
| plot_lvcomp_time | Generate a trajectory of population size (N1 vs N2) over time... |
| plot_mutualism_portrait | Plot phase portrait for mutualism model |
| plot_mutualism_time | Plot population trajectories over time for mutualism model |
| plot_predprey_portrait | Function for plotting phase portrait of predator-prey model |
| plot_predprey_time | Function for plotting phase portrait of predator-prey model |
| plot_source_sink | plot population trajectories of Pulliams' source sink... |
| plot_structured_population_agedist | Generate a trajectory of the proportion of individuals in... |
| plot_structured_population_lambda | Generate a trajectory of the total population size over time |
| plot_structured_population_size | Generate a trajectory of population size in each (st)age over... |
| plot_vector_field | generates a vector field |
| popmat_to_df | Converts population matrix into a long-format dataframe |
| print_app_footer | Print footer for Shiny apps |
| rm_predprey | Run Rosenzweig-MacArthur model |
| run_abiotic_comp_model | Run the Tilman abiotic resource competition model |
| run_abiotic_comp_rstar | Calculate RStar for the 2-consumer, 2-essential resource... |
| run_beverton_holt_model | Beverton Holt model |
| run_biotic_comp_model | Run a model of competition for a biotic resource |
| run_discrete_exponential_model | Discrete exponential growth model |
| run_discrete_logistic_model | Discrete logistic model |
| run_exponential_model | Run exponential growth model |
| run_ibiogeo_model | Runs the island biogeography model. |
| run_infectiousdisease_model | Run infectious disease models models |
| run_logistic_model | Run logistic growth model |
| run_lvcomp_model | Run the Lotka-Volterra competition model |
| run_mutualism | Run model of mutualism with saturating functional response |
| run_predprey_model | Run predator-prey model |
| run_ricker_model | Ricker model of discrete population growth with a carrying... |
| run_smith_fretwell_model | Make a Smith-Fretwell plot to show the optimal seed size |
| run_smith_fretwell_model_sp2 | Add a new Smith-Fretwell curve to a ggplot object created... |
| run_source_sink | Simulate dynamics of the source and sink populations under... |
| run_structured_population_simulation | Simulate growth of a (st)age-structured population |
| SEIR | SEIR model with vital rates |
| SEIR_ft | SEIR model with vital rates and frequency-dependent... |
| shiny_XXX | Run the shiny apps for various models |
| SIR | SIR model with vital rates |
| SIRD | SIRD model with vital rates |
| SIRD_ft | SIRD model with vital rates and frequency-dependent... |
| SIR_ft | SIR model with vital rates and frequency-dependent... |
| SIR_no_vitals | SIR model without vital rates |
| SIS | SIS model with vital rates |
| SIS_ft | SIS model with vital rates and frequency-dependent... |
| theme_apps | standard ggplot2 theme to use throughout the package |
| tilman_comp_essential | Internal function for running the abiotic resource... |
| vector_field_input | Generate a grid for plotting a vector field under... |
