Files in gbaquer3/rMSIcleanup

Anotation and removal of the matrix peaks in MALDI data

NEWS.md R/API.R R/benchmarking_module.R R/calssification_module.R R/figures.R R/graveyard.R R/package.R R/plotting.R R/utils_module.R R/validation_module.R R/vignette.R README.md cran-comments.md man/add_entry.Rd man/annotate_matrix.Rd man/batch_experiment.Rd man/before_after.Rd man/benchmark.Rd man/centroid2peakmatrix.Rd man/compute_s1.Rd man/compute_s2.Rd man/cross_validation.Rd man/exponential_decay_similarity.Rd man/find_first_gt.Rd man/find_first_lt.Rd man/generate_before_after.Rd man/generate_figures.Rd man/generate_file_name.Rd man/generate_pdf.Rd man/generate_pdf_from_file.Rd man/generate_pdf_report.Rd man/get_closest_peak.Rd man/get_columns_peakMatrix.Rd man/get_one_peakMatrix.Rd man/get_pareto_front.Rd man/ggplot_peak_image.Rd man/is_within_scan_tol.Rd man/plot_text.Rd man/quiet.Rd man/rMSIcleanup.Rd man/removeMatrix_compareAu.Rd man/removeMatrix_kMeansTranspose.Rd man/removeMatrix_padded.Rd man/removeMatrix_padded_new.Rd man/remove_matrix.Rd man/run_experiment.Rd man/specify_decimal.Rd man/spectral_clustering.Rd man/test_centroid_processing.Rd man/test_paraffin.Rd man/tsne_before_after.Rd tests/testthat.R tests/testthat/test-general.R