Files in geantonicelli/firstPackage
set of wrapper functions for phylogenetic analysis
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/data.R
R/functions.R
data/clustalRNA.rda
data/fastaRNA.rda
data/maseProtein.rda
data/msfRNA.rda
data/phylipProt.rda
data/phylipRNA.rda
firstPackage.Rproj
inst/extdata/CoV_genomes_annot.csv
inst/extdata/orf1ab.fasta
inst/extdata/orf1ab_align.msf
inst/extdata/orf1ab_annot.csv
inst/extdata/prot.mase
inst/extdata/spike.fasta
inst/extdata/spike_align.aln
inst/extdata/spike_align.fasta
inst/extdata/spike_align.phy
inst/extdata/spike_annot.csv
inst/extdata/spike_prot.fasta
inst/extdata/spike_prot_align.phy
inst/extdata/spike_prot_annot.csv
man/clean_alignment.Rd
man/clustalRNA.Rd
man/fastaRNA.Rd
man/load_alignment.Rd
man/make_tree.Rd
man/maseProtein.Rd
man/max_likelihood.Rd
man/max_parsimony.Rd
man/msfRNA.Rd
man/phylipProt.Rd
man/phylipRNA.Rd
man/print_alignment.Rd
man/retrieve_seqs.Rd
