Man pages for geantonicelli/firstPackage
set of wrapper functions for phylogenetic analysis
| clean_alignment | function to discard very poorly conserved regions from a... |
| clustalRNA | alignment of RNA sequences for the spike protein of some... |
| fastaRNA | alignment of RNA sequences for the spike protein of some... |
| load_alignment | function to load a file containing a sequences alignment... |
| make_tree | function to calculate a distance-based phylogenetic tree with... |
| maseProtein | an example of alignment in mase format of related protein... |
| max_likelihood | function to calculate a maximum likelihood phylogenetic tree |
| max_parsimony | function to calculate a maximum pasimony phylogenetic tree |
| msfRNA | alignment of RNA sequences for the replicase of some... |
| phylipProt | alignment of protein sequences of the spike protein of some... |
| phylipRNA | alignment of RNA sequences for the spike protein of some... |
| print_alignment | function to print an ordered sequences alignment in chunks of... |
| retrieve_seqs | function to automatically retrieve sequences from a databank... |
