Man pages for generable/rgeco
R package for accessing the Generable API
| configure | Configure Geco credentials, saving in keyring |
| dot-clean_cache | Never cache certain endpoints |
| drop_configs | Drop saved configurations Warning! this will remove all saved... |
| extract_subsample_info | Characterize sampling information given dataset info, using... |
| fetch_aes | Fetch AE data from the Generable API |
| fetch_association_state | Fetch the association states from the biomarker model |
| fetch_biomarker_params | Fetch biomarker sub-model parameters (f, kg, ks) |
| fetch_biomarkers | Fetch biomarker data from the Generable API |
| fetch_dataset | Fetch the dataset from the Generable API for a model run |
| fetch_doses | Fetch dosing data from the Generable API |
| fetch_draws | Fetch draws from the Generable API for a run |
| fetch_events | Fetch event data from the Generable API |
| fetch_hazard_betas | Fetch inferences for hazard betas |
| fetch_labs | Fetch lab data from the Generable API |
| fetch_lesion_biomarkers | Fetch per-lesion biomarker data from the Generable API |
| fetch_lesions | Fetch lesions data from the Generable API |
| fetch_pkpd | Query Generable API for pkpd data in a standard format... |
| fetch_predicted_biomarkers | Fetch predicted biomarker values |
| fetch_predicted_hazard | Fetch predicted hazard rate over time |
| fetch_predicted_median_survival | Fetch predicted median survival in days |
| fetch_predicted_survival | Fetch predicted survival curve over time |
| fetch_quantiles | Fetch quantiles from the Generable API for a run |
| fetch_subjects | Fetch subject data from the Generable API |
| find_runs | Find and filter runs on key features |
| format_quantiles_as_widths | Format a long summary of parameter quantiles (one record per... |
| geco_api_url | Formatted URL for api endpoints |
| list_biomarker_names | List distinct biomarker measurement names for a project |
| list_configs | List saved configurations |
| list_datasets | List datasets from the Generable API |
| list_models | List models from the Generable API |
| list_parameter_names | List the parameter names for a run |
| list_predictive_names | List the predictive names for a run |
| list_projects | Lists available projects |
| list_project_versions | Lists project versions within a project |
| list_runs | List runs from the Generable API |
| login | Log in to the Generable API |
| prep_km_data | Prepare kaplan-meier estimates in a tidy format |
| prep_pkpd_data | Merge and annotate pkpd biomarkers data with dosing data... |
| re-exports | Re-exports |
| rgeco | rgeco: R package for accessing the Generable API |
| sample_groups | Filter the data to include only 'n' groups |
