Man pages for geocryology/PermafrostDB
PermafrostDB
| convert_to_xlsx | Write NWT csv table to formatted xlsx |
| createAirLoggerNCF | Create empty netCDF file for surface temperatures |
| createGenericNCDF | Create empty netCDF file for one or more thermistor chains |
| createMultiThermistorNCF | Create empty netCDF file for one or more thermistor chains |
| createOrthogonalThermistorNCF | Create empty netCDF file thermistor stations with identical... |
| createSurfaceLoggerNCF | Create empty netCDF file for surface temperatures |
| createTimeSeriesProfileNCF | Create empty netCDF file for (temperature) time series... |
| create_tunnel | Create SSH tunnel |
| dbpf_close_tunnel | Close database ssh tunnel if it exists |
| dbpf_con | dbpf_con |
| dbpf_defox_bulk | De-fox data in bulk, as identified by location and time. |
| dbpf_device_add | Adds a new device to DB |
| dbpf_device_exists | Check if a device serial number exists |
| dbpf_device_locations | Return location history for one device |
| dbpf_device_report | Print a report on a specific device |
| dbpf_devices | Return table of devices |
| dbpf_device_sensors | List all channels and other information for one device |
| dbpf_devices_locations_add | Adds new devices_locations to database |
| dbpf_devices_sensors_add | Adds new devices_sensors to database |
| dbpf_export_csv_generic | Download database time series in CSV ASCII format |
| dbpf_export_csv_GTNP | Download database time series in GTNP-style ASCII format |
| dbpf_export_csv_NWT | Download database time series in CSV ASCII format |
| dbpf_export_nc_air | Download air temperature and humidity time series to netCDF |
| dbpf_export_nc_borehole_erddap | export borehole netcdf for ERDDAP |
| dbpf_export_nc_chain_multi | Download ground temperature time series to netCDF |
| dbpf_export_nc_chain_ortho | Download ground temperature time series to netCDF |
| dbpf_export_nc_erddap | Download ground temperature time series to ERDDAP-optimized... |
| dbpf_export_nc_generic | Export continuous data to netcdf |
| dbpf_export_nc_surface | Download surface temperature time series to netCDF |
| dbpf_export_xlsx_NWT | Write permafrost data as NWT xlsx standard |
| dbpf_FG2toGP5W | Convert FG2 to GP5W |
| dbpf_fields | Return table of fields for all tables |
| dbpf_GP5W_file_formatter | Reformat GP5W file |
| dbpf_horizon_add | Add Horizon |
| dbpf_horizon_get | Get horizon lines |
| dbpf_horizon_plot | Plot horizon |
| dbpf_inventory | Inventory observations |
| dbpf_kml | Write a kml plotting site locations |
| dbpf_location_name_exists | Check if a location name exists |
| dbpf_location_report | Location report |
| dbpf_locations | Return table of locations, either points or polygons. |
| dbpf_locations_add | Adds new locations to database |
| dbpf_locations_add_plot | Adds new polygons to database |
| dbpf_locations_in_plot | finds loggers within a plot |
| dbpf_maintenance_add | Add maintenance item |
| dbpf_maintenance_needs | List maintenance needs |
| dbpf_maintenance_resolve | Resolve maintenance issue |
| dbpf_manual_obs_add | Add manual observations to DB |
| dbpf_manual_obs_by_location | Manual observations at location |
| dbpf_manual_obs_plot_xlsx | Import plot data and manual observations from XLS file into... |
| dbpf_manual_obs_subplot_xlsx | Import subplot data and manual observations from XLS file... |
| dbpf_observations_agg | Return statistics about observations in DB |
| dbpf_observations_meta | Get raw observations |
| dbpf_observations_plot | Plot data for one location |
| dbpf_observations_raw | Get raw observations |
| dbpf_observations_stats | Return statistics about observations in DB |
| dbpf_observations_upload_check | Used to see if .csv is primed for upload. |
| dbpf_sensor_add | Adds a new sensor to DB |
| dbpf_sensor_add_xlsx | Adds a new sensors to DB based on Excel file. |
| dbpf_sensors | Return table of sensors |
| dbpf_shiny | dbpf_shiny DESCRIPTION NOT YET OK |
| dbpf_table_columns | Return all column names from a table |
| dbpf_tables | Returns names of all tables within DB |
| dbpf_trumpet_curve | Plot trumpet curve |
| dbpf_TSA_GST | Time Series Analysis for GST |
| dbpf_tunnel | SSH database connection |
| file_name_increment | Increment filename |
| format_NWT | Format data in NTGS-style |
| interpolate_sensor_offset | Interpolate sensor offsets |
| interpolate_single | Interpolate sensor offsets for a single site |
| intersect_profiles | From-To Union |
| make_profile_base | Create template netcdf file for profile borehole data |
| nc_attributes_from_template | Write attributes from template |
| new_import_record | New import record |
| PermafrostDb | PermafrostDB: A package for working with a database for... |
| regrid_interval | Regrid dataframe |
| regrid_profile | Regrid profile data |
