Files in gfalbery/ViralSharingPhylogeography
What the Package Does (One Line, Title Case)
.gitignore
.zenodo.json
Albersnet.Rproj
DESCRIPTION
Display_Map2.png
Figures/Figure1.jpeg
Figures/Figure1Patchwork.jpeg
Figures/Figure2.jpeg
Figures/Figure2Patchwork.jpeg
Figures/Figure3.jpeg
Output Files/.gitignore
Output Files/AllNetworkStats.Rdata
Output Files/AllPredictions1b.Rdata
Output Files/BAMList.Rdata
Output Files/Finaldf.Rdata
Output Files/Panth1.Rdata
PredictedNetwork.rds
PredictedNetwork.zip
R/0a_Sharing Network Data Import.R
R/0b_Phylogenetic Data Import.R
R/0c_Spatial Data Import.R
R/0d_Final Dataset Creation.R
R/1_Sharing GAMMs.R
R/2_Simulating Known Network.R
R/3_Simulating Whole Network.R
R/4_Whole Network Characteristics.R
R/5_Host Validation Procedure.R
R/6_Figures.R
R/7_Results.R
R/8_Docker Admin.R
README.md
SIFigures/Figure SI1.jpeg
SIFigures/Figure SI2.jpeg
SIFigures/Figure SI3.jpeg
SIFigures/Figure SI4.jpeg
SIFigures/Figure SI5.jpeg
SIFigures/Figure SI6.jpeg
SIFigures/Figure SI7.jpeg
SIFigures/Figure SI8.jpeg
SIFigures/Figure SI9.jpeg
data/.gitignore
data/Associations.csv
data/Defunct/BrierleyNames.csv
data/Defunct/BrierleyRNA.csv
data/Defunct/CentroidList.Rdata
data/Defunct/GLW/.gitignore
data/Defunct/HostPolygons.Rdata
data/Defunct/IUCN_taxonomy_23JUN2016.csv
data/Defunct/MamFuncDat.txt
data/Defunct/MammalRanges2.Rdata
data/Defunct/PseudoMatrix.csv
data/Defunct/RNANames.csv
data/Defunct/RNASynonyms.csv
data/Defunct/ViralTree.tre
data/Defunct/VirusPolygons.Rdata
data/Defunct/VirusRangeOverlap.Rdata
data/EID/LocationInteractions_EID2.csv
data/EID/SpeciesInteractions_EID2.csv
data/GridList.Rdata
data/Hosts.csv
data/PanTHERIA_1-0_WR05_Aug2008.txt
data/PanTHERIA_1-0_WR93_Aug2008.txt
data/Viruses.csv
data/cytb_supertree.tree
data/ele_1307_sm_sa1.tre
data/intermediate/HP3-ST_PDmatrix.csv
data/intermediate/HP3-cytb_PDmatrix.csv
data/supertree_mammals.tree
