API for girke-lab/ChemmineR-release
Cheminformatics Toolkit for R

Global functions
AP-class	Man page
APset-class	Man page
DUD	Man page
DrugBank	Man page
ExtSDF-class	Man page
FP-class	Man page
FPset-class	Man page
MF	Man page
MW	Man page
SDF-class	Man page
SDF2apcmp	Man page
SDFset	Man page
SDFset-class	Man page
SDFset2SDF	Man page
SDFset2SDF,SDFset-method	Man page
SDFset2SDF-methods	Man page
SDFset2SDF<-	Man page
SDFset2SDF<-,SDFset-method	Man page
SDFset2list	Man page
SDFset2list,SDFset-method	Man page
SDFset2list-methods	Man page
SDFstr-class	Man page
SMI-class	Man page
SMIset-class	Man page
[,APset-method	Man page
[,FPset-method	Man page
[,SDF-method	Man page
[,SDFset-method	Man page
[,SDFstr-method	Man page
[,SMIset-method	Man page
[<-,APset-method	Man page
[<-,FPset-method	Man page
[<-,SDF-method	Man page
[<-,SDFset-method	Man page
[<-,SDFstr-method	Man page
[<-,SMIset-method	Man page
[[,APset-method	Man page
[[,FPset-method	Man page
[[,SDF-method	Man page
[[,SDFset-method	Man page
[[,SDFstr-method	Man page
[[,SMIset-method	Man page
[[<-,APset-method	Man page
[[<-,SDF-method	Man page
[[<-,SDFset-method	Man page
[[<-,SDFstr-method	Man page
addDescriptorType	Man page
addNewFeatures	Man page
ap	Man page
ap,AP-method	Man page
ap,APset-method	Man page
ap-methods	Man page
apfp	Man page
apset	Man page
apset2descdb	Man page
as.character,FP-method	Man page
as.character,FPset-method	Man page
as.character,SMI-method	Man page
as.character,SMIset-method	Man page
as.matrix,FPset-method	Man page
as.numeric,FP-method	Man page
as.vector,FP-method	Man page
atomblock	Man page
atomblock,SDF-method	Man page
atomblock,SDFset-method	Man page
atomblock-methods	Man page
atomblock<-	Man page
atomblock<-,SDFset-method	Man page
atomcount	Man page
atomcount,SDF-method	Man page
atomcount,SDFset-method	Man page
atomcountMA	Man page
atomprop	Man page
atomsubset	Man page
batchByIndex	Man page
bondblock	Man page
bondblock,SDF-method	Man page
bondblock,SDFset-method	Man page
bondblock-methods	Man page
bondblock<-	Man page
bondblock<-,SDFset-method	Man page
bonds	Man page
browseJob	Man page
bufferLines	Man page
bufferResultSet	Man page
byCluster	Man page
c,APset-method	Man page
c,FP-method	Man page
c,FPset-method	Man page
c,SDFset-method	Man page
c,SMIset-method	Man page
canonicalNumbering	Man page
canonicalize	Man page
cid	Man page
cid,APset-method	Man page
cid,FPset-method	Man page
cid,SDFset-method	Man page
cid,SMIset-method	Man page
cid<-	Man page
cid<-,APset-method	Man page
cid<-,FPset-method	Man page
cid<-,SDFset-method	Man page
cid<-,SMIset-method	Man page
cluster.sizestat	Man page
cluster.visualize	Man page
cmp.cluster	Man page
cmp.duplicated	Man page
cmp.parse	Man page
cmp.parse1	Man page
cmp.search	Man page
cmp.similarity	Man page
coerce,APset,AP-method	Man page
coerce,APset,list-method	Man page
coerce,FPset,FP-method	Man page Man page
coerce,SDF,SDFset-method	Man page
coerce,SDF,SDFstr-method	Man page
coerce,SDF,character-method	Man page
coerce,SDF,list-method	Man page
coerce,SDFset,SDF-method	Man page
coerce,SDFset,SDFstr-method	Man page
coerce,SDFset,list-method	Man page
coerce,SDFstr,SDFset-method	Man page
coerce,SDFstr,list-method	Man page
coerce,SMIset,SMI-method	Man page
coerce,character,FPset-method	Man page
coerce,character,SDF-method	Man page
coerce,character,SDFstr-method	Man page
coerce,character,SMI-method	Man page
coerce,character,SMIset-method	Man page
coerce,list,APset-method	Man page
coerce,list,SDF-method	Man page
coerce,list,SDFset-method	Man page
coerce,list,SDFstr-method	Man page
coerce,list,SMIset-method	Man page
coerce,matrix,FPset-method	Man page
coerce,numeric,FP-method	Man page
conMA	Man page
datablock	Man page
datablock,SDF-method	Man page
datablock,SDFset-method	Man page
datablock-methods	Man page
datablock2ma	Man page
datablock<-	Man page
datablock<-,SDFset-method	Man page
datablocktag	Man page
datablocktag,SDF-method	Man page
datablocktag,SDFset-method	Man page
db.explain	Man page
db.subset	Man page
dbTransaction	Man page
desc2fp	Man page
draw_sdf	Man page
exactMassOB	Man page
findCompounds	Man page
findCompoundsByName	Man page
fingerprintOB	Man page
fold	Man page
fold,FP-method	Man page
fold,FPset-method	Man page
foldCount	Man page
foldCount,FP-method	Man page
foldCount,FPset-method	Man page
forestSizePriorities	Man page
fp2bit	Man page
fpSim	Man page
fptype	Man page
fptype,FP-method	Man page
fptype,FPset-method	Man page
fromNNMatrix	Man page
genAPDescriptors	Man page
genParameters	Man page
generate3DCoords	Man page
getAllCompoundIds	Man page
getAtomAttr,ExtSDF-method	Man page
getBondAttr,ExtSDF-method	Man page
getCompoundFeatures	Man page
getCompoundNames	Man page
getCompounds	Man page
getIds	Man page
grepSDFset	Man page
groups	Man page
header	Man page
header,SDF-method	Man page
header,SDFset-method	Man page
header-methods	Man page
header<-	Man page
header<-,SDFset-method	Man page
initDb	Man page
jarvisPatrick	Man page
jarvisPatrick_c	Man page
jobToken-class	Man page
launchCMTool	Man page
length,APset-method	Man page
length,FPset-method	Man page
length,SDFset-method	Man page
length,SDFstr-method	Man page
length,SMIset-method	Man page
listCMTools	Man page
listFeatures	Man page
loadSdf	Man page
loadSmiles	Man page
makeUnique	Man page
maximallyDissimilar	Man page
nearestNeighbors	Man page
numBits	Man page
numBits,FP-method	Man page
numBits,FPset-method	Man page
obmol	Man page
obmol,SDF-method	Man page
obmol,SDFset-method	Man page
obmol-methods	Man page
parBatchByIndex	Man page
plot	Man page
plot,SDF-method	Man page
plot,SDFset-method	Man page
plotStruc	Man page
propOB	Man page
pubchemFPencoding	Man page
randomPriorities	Man page
read.AP	Man page
read.SDFindex	Man page
read.SDFset	Man page
read.SDFstr	Man page
read.SMIset	Man page
regenerateCoords	Man page
result	Man page
rings	Man page
sdf.subset	Man page
sdf.visualize	Man page
sdf2ap	Man page
sdf2list	Man page
sdf2list,SDF-method	Man page
sdf2smiles	Man page
sdf2smilesOB	Man page
sdf2str	Man page
sdf2str,SDF-method	Man page
sdf2str-methods	Man page
sdfStream	Man page
sdfid	Man page
sdfid,SDF-method	Man page
sdfid,SDFset-method	Man page
sdfsample	Man page
sdfstr2list	Man page
sdfstr2list,SDFstr-method	Man page
sdfstr2list-methods	Man page
sdfstr2list<-	Man page
sdfstr2list<-,SDFstr-method	Man page
searchSim	Man page
searchString	Man page
selectInBatches	Man page
setPriorities	Man page
show,AP-method	Man page
show,APset-method	Man page
show,ExtSDF-method	Man page
show,FP-method	Man page
show,FPset-method	Man page
show,SDF-method	Man page
show,SDFset-method	Man page
show,SDFstr-method	Man page
show,SMI-method	Man page
show,SMIset-method	Man page
show,jobToken-method	Man page
smartsSearchOB	Man page
smiles2sdf	Man page
smiles2sdfOB	Man page
smisample	Man page
splitNumChar	Man page
status	Man page
toolDetails	Man page
trimNeighbors	Man page
validSDF	Man page
view	Man page
view,APset-method	Man page
view,FPset-method	Man page
view,SDFset-method	Man page
view,SMIset-method	Man page
view-methods	Man page
write.SDF	Man page
write.SDFsplit	Man page
write.SMI	Man page