addPlotID | Adds PlotID column to LAI data |
addPlotIDFromData | Adds PlotID column to LAI data |
convertSunScanDirectory | Converts all SunScan data files in a directory (and it's... |
convertSunscanFile | Converts a SunScan data file |
countMeasurements | Counts measurements |
createBoxplot | Creates a boxplot for LAI data |
createFolders | Creates (sub)folders for converted data and reports |
createGridPlot | Plots the PlotNr arranged in a grid |
createGridPlotLAI | Plots LAI on a grid |
createSeriesInfo | Summarise information about measurement series |
createSummary | Summarises data for each PlotID |
createTimePlot | Plots measurements over time |
createTimePlotLAI | Plots measurements over time |
generateInitialGridData | Creates initial grid data |
generateReport | Generates report concerning converted data |
generateSampleMeasurementIdData | Creates Sample MeasurementID data |
generateSamplePlotIdData | Generates sample ID data |
getData | Extracts LAI data from the file lines |
getFileList | Fetches recursively all possible data files from a directory |
getHeader | Gets meta data from the file header |
getParData | Extracts PAR data from the file lines |
getSmallHeader | Gets meta data from the file header |
headerFileName | File name for the metadata file |
isDataLine | Checks if the line is a data line |
isMovedFile | Checks if the data file has been moved to subfolder... |
isSunscanFile | Checks if given file is a valid SunScan file |
isTitleLine | Checks if the line is a title line |
movedFileName | Returns path for the data file moved to 'original' subfolder |
moveFilesToSubfolders | Moves data file to subfolder 'original' |
moveOriginalFile | Moves data file to subfolder 'original' |
readConvertedHeader | Reads converted data |
readIdData | Read dataframe with PlotID column |
reorderDataColumns | Reorders columns in converted data |
runSunscanApp | Runs Shiny app |
saveHeader | Saves metadata to file |
splitLines | Splits the data when file contains multiple headers |
stripFileExtension | Strips the file extension |
sunscanimport | Functions to import, convert and visualise data from LAI... |
transformToWideFormat | Transform LAI data to wide format (1 row per PlotID) |
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