Man pages for gmteunisse/Fantaxtic
Fantaxtic - nested bar plots for phyloseq data
| collapse_taxa | Subset a phyloseq object to a set of taxa. |
| fantaxtic_bar-deprecated | Generate a barplot of relative taxon abundances |
| fantaxtic-deprecated | Deprecated functions in package 'fantaxtic'. |
| gen_colors-deprecated | Generate a color palette. |
| gen_palette-deprecated | Generate a color palette. |
| gen_shades_tints-deprecated | Generate shade and tint variants for a base color. |
| gen_uniq_lbls-deprecated | Generate unique labels. |
| get_top_taxa-deprecated | Get the most abundant taxa from a phyloseq object |
| label_duplicate_taxa | Add unique labels to identical taxa |
| move_label | Relevel a factor in a psmelt dataframe |
| move_nested_labels | Relevel a nested factor in a psmelt dataframe |
| name_na_taxa | Name NA taxa |
| namep_taxa-deprecated | Add names for missing taxon names in phyloseq objects |
| nested_top_taxa | Get the most abundant taxa over two taxonomic levels |
| plot_nested_bar | Plot a nested bar plot |
| shuffle_colors-deprecated | Reshuffle a list of colors. |
| taxon_colours | Generate a colour for each taxon |
| top_taxa | Get the most abundant taxa from a phyloseq object |
