Files in gnrobinson/cloneR
Identifying clonal groups to aid clone correction in population-based studies
.github/workflows/workflow.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/calc_dist.R
R/cloneR.R
R/extract_labels.R
R/make_Q.R
R/make_subsets.R
R/read_geno.R
README.md
cloneR.png
cloneR_pipeline.png
data/published_data/Eth320.VF.SNP.vcf.gz
data/published_data/clonal_pure.geno
data/published_data/epidemic_clonal.geno
data/published_data/outcrossing.geno
data/published_data/predominantly_clonal.geno
data/unit_testing/ploidy1_plusinfo.unit_test.vcf
data/unit_testing/ploidy2_noinfo.unit_test.vcf
data/unit_testing/ploidy2_plusinfo.unit_test.vcf
man/calc_dist.Rd
man/cloneR.Rd
man/extract_labels.Rd
man/make_Q.Rd
man/make_subsets.Rd
man/read.geno.Rd
output_figure.png
phylogenetic_figure.png
subdivision_figure.png
tests/testthat.R
tests/testthat/test-cloneR.R
variance_figure.png
