Man pages for gqlNU/publicWW
What the Package Does (One Line, Title Case)
| add.map.legend | Add legend to map |
| add.region.to.lsoas | Add regional indicator to each LSOA centriod |
| aggregate_lsoa | aggregate LSOA concentration to the given geographical level... |
| approximate.catchment.using.circle | Approximating catchments using circles with varying radius to... |
| bi.legend | Construct biscale |
| extract.1d.sptm.interactions | Extract space-time interaction samples for a given site or a... |
| extract.joint.hyperpar | Extract hyperparameters from the posterior draws of the INLA... |
| extract.posterior.samples.from.joint | Obtain posterior samples from the INLA approximate joint... |
| fit_inla | fit inla model from data, covariates, and predictor. |
| forestplot | for producing a forest plot to visualise level correlation... |
| form.fitdata.stk | y_column can be 'log_gc' (for the original data) or 'log_gcX'... |
| get.geo.lookups | Construct lookup tables between LSOA11 and various other... |
| get_inset_coords | Get the coordinate for the map inset |
| get_lsoa_agg_popw | format data for aggregation |
| get.LSOA.covariates | get LSOA-level covariates from the... |
| get_prev_sims | Get simulated values for the debiased prevalence on the logit... |
| get_sites_geo | Getting locations of the STW sites |
| get.starting.day | A lookup table between time index and first day of the week |
| inCircle | To check if a point (x, y) is within a circle centred at (c1,... |
| is_consecutive | Read the publicly available data into R |
| load_pred | Load predictions of viral concentration |
| LSOA.to.catchment.covariates | get catchment level covariates from LSOA |
| LSOA.to.catchment.lookup | aggregating LSOA covariates to STW catchment using the open... |
| ltla_map | produce various LTLA maps |
| merge_ww_with_site_geo | Merging site geo data with wastewater data |
| pcprior.rho | Setting PC prior on the AR1 coefficient that Pr(|rho|>a)=pb... |
| pick.1st.week | Picking the first week of each month |
| point2points.distances | Calculate the Euclidian distance between a point (centroid)... |
| post_summary | posterior summary |
| ppp | Posterior probability |
| read_LSOA_centroids | Read the publicly available population-weighted LSOA... |
| read_public_data | Read the publicly available data into R |
| replace_LOD | todo: L differs by type of measurement technique. Need to... |
| set_priors | A function to set prior specification (apart from the AR1... |
| ww_wide_to_long | Transform the raw public wastewater data from wide to long... |
