API for graumannlab/readat
Functionality to Read and Manipulate SomaLogic ADAT files
| Global functions | |
|---|---|
| WideSomaLogicData | Man page Source code |
| WideSomaLogicDataAttributes | Man page |
| [.WideSomaLogicData | Man page |
| `[.WideSomaLogicData` | Source code |
| aptamers | Man page |
| as.ExpressionSet | Man page Source code |
| as.ExpressionSet.WideSomaLogicData | Man page Source code |
| as.MSnSet | Man page Source code |
| as.MSnSet.WideSomaLogicData | Man page Source code |
| as.SummarizedExperiment | Man page Source code |
| as.SummarizedExperiment.WideSomaLogicData | Man page Source code |
| as.matrix.WideSomaLogicData | Man page Source code |
| assert_all_are_entrez_gene_ids | Source code |
| assert_all_are_entrez_gene_symbols | Source code |
| assert_all_are_uniprot_ids | Source code |
| checkEntrezGeneIds | Source code |
| checkEntrezGeneSymbols | Source code |
| checkUniprotIds | Source code |
| chromosomalPositions | Man page |
| colnamesStartWithSeqId | Man page Source code |
| convertSeqIdToAptamer | Man page Source code |
| createSampleSubmission | Man page Source code |
| defunct | Man page |
| ensemblIds | Man page |
| extractSampleData | Man page Source code |
| fixCharacterColClasses | Source code |
| fixFailFlag | Source code |
| fixListColClasses | Source code |
| fixMultiValueSeparators | Source code |
| getChecksum | Man page Source code |
| getChromosomalPositions | Man page Source code |
| getData | Source code |
| getEnsemblIds | Man page Source code |
| getGoBiologicalProcesses | Man page Source code |
| getGoCellularComponents | Man page Source code |
| getGoMolecularFunctions | Man page Source code |
| getIntensities | Man page Source code |
| getIntensities.LongSomaLogicData | Man page Source code |
| getIntensities.WideSomaLogicData | Man page Source code |
| getKeggDefinitions | Man page Source code |
| getKeggModules | Man page Source code |
| getKeggPathways | Man page Source code |
| getMetadata | Man page Source code |
| getNFields | Source code |
| getPfam | Man page Source code |
| getSampleData | Man page Source code |
| getSampleData.LongSomaLogicData | Man page Source code |
| getSampleData.WideSomaLogicData | Man page Source code |
| getSampleIdVar | Man page Source code |
| getSequenceData | Man page Source code |
| getSequencesWithLargestBetweenGroupVariation | Man page Source code |
| getSequencesWithLargestBetweenGroupVariation.LongSomaLogicData | Source code |
| getUniProtKeywords | Man page Source code |
| goBiologicalProcess | Man page |
| goCellularComponent | Man page |
| goMolecularFunction | Man page |
| ignoreHce | Source code |
| isPass | Man page Source code |
| isSomaEset | Man page Source code |
| is_entrez_gene_id | Source code |
| is_entrez_gene_symbol | Source code |
| is_uniprot_id | Source code |
| keggDefinitions | Man page |
| keggDefinitions1129 | Man page |
| keggModules | Man page |
| keggModules1129 | Man page |
| keggPathways | Man page |
| keggPathways1129 | Man page |
| list_names | Source code |
| list_names0 | Source code |
| list_to_data.frame | Source code |
| melt.WideSomaLogicData | Man page Source code |
| orderPlatePosition | Man page Source code |
| pfam | Man page |
| readAdat | Man page Source code |
| readComments | Man page Source code |
| readControls | Man page Source code |
| readFirstChar | Man page Source code |
| readHeader | Source code |
| readMetadata | Source code |
| readSampleAndIntensityData | Source code |
| readSamples | Man page Source code |
| readSequenceData | Source code |
| readSlides | Man page Source code |
| readat-defunct | Man page |
| removeFailures | Source code |
| removeNonSamples | Source code |
| setChecksum | Man page Source code |
| setIntensities | Man page Source code |
| setMetadata | Man page Source code |
| setSampleData | Man page Source code |
| setSequenceData | Man page Source code |
| sfread | Source code |
| soma2eset | Man page Source code |
| suppressSomeFeedback | Source code |
| uniprotKeywords | Man page |
| updateFields | Source code |
| valuesOf | Source code |
| writeSampleSubmissionForm | Man page Source code |
