Man pages for grunwaldlab/oomycetedbtools
Tools for managing the OomyceteDB website and database
| apply_config_file | Apply defaults arguments from YAML |
| check_database_format | Check database format |
| check_database_source_present | Check that database is present |
| check_genbank_ids | Check Genbank IDs |
| check_sequence | Check sequences |
| check_sequence_ids | Check sequence IDs |
| check_taxon_ids | Check Genbank taxon IDs |
| config | Default parameters |
| find_config | Find config file in a parent directory |
| find_release_dir | Find the folder with the release files |
| get_last_release | Get path to latest release |
| get_release_data | Get release metadata table |
| parent_dir_paths | Get paths to all parent directories |
| print_error_report | Print an error message |
| release | Release a version of the database to the OomyceteDB |
| run_check | Run a check function |
| validate | Validate the source database format |
