controlCorrection | Correct experimental profiles with control sample |
coverage.rpm | Coverage calculation and normalization to reads per million... |
export.bed | Export ranges in BED format |
export.wig | Export values in WIG format |
filterFFT | Clean noise and smoothing for genomic data using... |
fragmentLenDetect | Fragments length detection from single-end sequencing samples |
mergeCalls | Automatic merging of overlapped nucleosome calls |
nucleosome_htseq | Example reads from high-troughtput sequencing nucleosome... |
nucleosome_tiling | Example intensities from Tiling Microarray nucleosome... |
nucleR-package | Nucleosome positioning package for R |
pcKeepCompDetect | Auto detection of a fitted 'pcKeepComp' param for filterFFT... |
peakDetection | Detect peaks (local maximum) from values series |
peakScoring | Peak scoring function |
plotPeaks | Nucleosome calling plot function |
processReads | Process reads from High-Troughtput Sequencing experiments |
processTilingArray | Obtain and clean nucleosome positioning data from tiling... |
readBAM | Import reads from a list of BAM files. |
readBowtie | Import reads from a vector of Bowtie files |
syntheticNucMap | Generates a synthetic nucleosome map |
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