API for guenardg/MPSEM
Modelling Phylogenetic Signals using Eigenvector Maps

Global functions
$<-.graph	Man page
DNArate	Man page Source code
InflMat	Man page Source code
InflMat-class	Man page
MPSEM-generics	Man page
MPSEM-package	Man page
PEM	Man page Source code
PEM-class	Man page
PEM-functions	Man page
PEM-utils	Man page
PEMvar	Source code
PEMweights	Man page
Psquare	Man page
`$<-.graph`	Source code
`edge<-.InflMat`	Source code
`edge<-.graph`	Source code
`edge<-`	Source code
`edgenames<-.InflMat`	Source code
`edgenames<-.graph`	Source code
`edgenames<-`	Source code
`geometry<-.graph`	Source code
`geometry<-`	Source code
`labels<-`	Source code
add.edge	Man page Source code
add.vertex	Man page Source code
aggregateOnVertex	Man page Source code
anova.pemlm	Man page Source code
as.data.frame.PEM	Man page Source code
as.graph	Man page Source code
as.graph.phylo	Man page Source code
as.matrix.PEM	Man page Source code
as.phylo.graph	Man page Source code
concatenate	Man page Source code
drawDNASequence	Man page Source code
drawEvolRate	Man page Source code
dstGraph	Man page Source code
dst_idx	Source code
edge	Man page Source code
edge.InflMat	Man page Source code
edge.graph	Man page Source code
edge<-	Man page
edge<-.InflMat	Man page
edge<-.graph	Man page
edgenames	Man page Source code
edgenames.InflMat	Man page Source code
edgenames.graph	Man page Source code
edgenames<-	Man page
edgenames<-.InflMat	Man page
edgenames<-.graph	Man page
evolution.model	Man page Source code
evolution.model.PEM	Man page Source code
geometry	Man page Source code
geometry.graph	Man page Source code
geometry<-	Man page
geometry<-.graph	Man page
getConnected	Man page Source code
getMedian	Man page Source code
getNonConnected	Man page Source code
getOrigin	Man page Source code
getPhyloXY	Source code
getProcessOrder	Source code
getTerminal	Man page Source code
getVertexCoordinate	Source code
getVertexMinOrder	Source code
graph	Man page Source code
graph-class	Man page
graph-functions	Man page
graph-purge	Man page
graph-utils	Man page
graphDist	Man page
graphModplot	Man page Source code
harmonicMean	Man page
hmean	Man page Source code
inflMat	Man page
invDistWeighting	Man page Source code
isDivergent	Man page Source code
isLinear	Man page Source code
isTree	Man page Source code
isUnderEdge	Man page Source code
isUnderVertex	Man page Source code
labels<-	Man page
lm-utils	Man page
locate	Man page Source code
locate.graph	Man page Source code
model.data	Man page
molEvolSim	Man page Source code
nedge	Man page Source code
nedge.InflMat	Man page Source code
nedge.graph	Man page Source code
pemlm	Man page Source code
pemlm-class	Man page
plot.graph	Man page Source code
predict.PEM	Man page Source code
predict.pemlm	Man page Source code
print.InflMat	Man page
print.PEM	Man page Source code
print.QTEM	Man page Source code
print.graph	Man page
print.pemlm	Man page Source code
purge.median	Man page Source code
purge.terminal	Man page
randomGraph	Man page
reorderGraph	Man page Source code
rm.edge	Man page Source code
rm.vertex	Man page Source code
show.sequence	Man page Source code
simulateSequence	Man page Source code
simulateTrait	Man page Source code
summary.pemlm	Man page Source code
traitEvolSim	Man page Source code
update.PEM	Man page Source code
utils	Man page
weighted.hmean	Man page Source code
write.fasta	Man page Source code