Man pages for guiastrennec/ggxpose
Diagnostics for Pharmacometric Models
| add_facet_var | Add faceting variable |
| aes_c | Set new default value for ggplot2 aesthetics |
| aes_filter | Convenience function to easily filter ggplot2 aesthetics |
| aes_rename | Convenience function to easily rename ggplot2 aesthetics |
| all_data_problem | Get all data problems |
| all_file_problem | Get all file problems |
| amt_vs_idv | Compartment kinetics |
| append_suffix | Append suffix contained in the 'xp_theme' to titles |
| as.ctime | Time converter |
| as.nm.table.list | Convert an object to 'nm_table_list' class |
| as.xpdb | Convert an object to 'xpose_data' class |
| as.xpose.plot | Convert an object to 'xpose_plot' class |
| as.xpose.theme | Convert an object to 'xpose_theme' class |
| check_plot_type | Check plot 'type' |
| check_problem | Check .problem, .subprob and .method |
| check_quo_vars | Check quoted variables |
| check_scales | Check plot scales |
| check_xpdb | Check xpdb |
| combine_tables | Combine tables |
| data_opt | Create options for data import |
| default_plot_problem | Get the default data problem to be plotted |
| distrib_plot | Distribution plots of ETA and parameters |
| drop_fixed_cols | Return names of columns having several unique values |
| dv_vs_pred | Observations plotted against model predictions |
| edit_xpose_data | Master xpdb editing function |
| fetch_data | Fetch data |
| file_path | Generate clean file paths |
| filter_xp_theme | Subset an 'xp_theme' |
| get_code | Access model code |
| get_data | Access model output table data |
| get_extension | Get file extension |
| get_file | Access model output file data |
| get_prm | Access model parameters |
| get_prm_transformation_formulas | Generate default transformation formulas for parameters |
| get_special | Access special model data |
| get_summary | Access model summary data |
| gg_themes | An additional set of themes for ggplot2 |
| grab_iter | Grab parameter for a given iteration number |
| index_table | Index table columns |
| ind_plots | Observations, individual predictions and population... |
| irep | Add simulation counter |
| is.formula | Test for formula class |
| is.nm.model | Test for nm_model class |
| is.nm.table.list | Test for nm_table_list class |
| is.xpdb | Test for xpose_data class |
| is.xpose.plot | Test for xpose_plot class |
| is.xpose.theme | Test for xpose_theme class |
| last_data_problem | Get last data problem |
| last_file_method | Get last file estimation method |
| last_file_problem | Get last file problem |
| last_file_subprob | Get last file subproblem |
| list_nm_tables | List NONMEM output tables |
| list_nm_tables_manual | Creates an nm_table_list from manually defined table name... |
| list_vars | List available variables |
| list_xpdb | List available datasets |
| make_extension | Generate extension string |
| manual_nm_import | Manually define nonmem tables to be imported |
| merge_firstonly | Merge firstonly table with full length tables |
| minimization_plots | Parameter value or gradient vs. iterations |
| modify_xpdb | Add, remove or rename variables in an xpdb |
| msg | Message function |
| only_distinct | Create functions for data deduplication |
| only_obs | Create functions to drop non observation records |
| parse_arg | Parse arguments from xpose to ggplot2 format |
| parse_nm_files | Parse NONMEM output files |
| parse_title | Parse keywords in string based on values contained in an xpdb |
| pred_vs_idv | Observations and model predictions plotted against the... |
| print.ggplot | Import print ggplot method |
| print.xpose_data | Print an xpose_data object |
| print.xpose_plot | Draw an xpose_plot object |
| prm_table | Display a parameter estimates to the console |
| qq_plot | QQ plots of ETA and residuals |
| raw_to_tibble | Convert raw strings to tibble |
| read_args | Define data import arguments |
| read_funs | Define data import functions |
| read_nm_files | NONMEM output file import function |
| read_nm_model | NONMEM model file parser |
| read_nm_tables | NONMEM output table import function |
| reexports | Objects exported from other packages |
| reorder_factors | Reorder factors by numerical order |
| res_vs_idv | Residuals plotted against the independent variable |
| res_vs_pred | Residuals plotted against population predictions |
| set_vars | Set variable type, label or units |
| software | Get software from the xpdb |
| subset_xpdb | Subset datasets in an xpdb |
| summarise_xpdb | Group/ungroup and summarize variables in an xpdb |
| summary.xpose_data | Summarizing xpose_data |
| template_titles | Template titles |
| tidyr_new_interface | Check tidyr version |
| transform_prm | Mean and variance of tranformed parameters |
| update_args | Update 'xpose_geoms' arguments |
| update_extension | Update file extension |
| update_themes | Create xpose theme |
| vpc | Visual predictive checks |
| vpc_data | Visual predictive checks data |
| vpc_opt | Generate a list of options for VPC data generation |
| xpdb_ex_pk | 'xpose_data' examples |
| xpdb_index_update | Update data index |
| xp_geoms | Generic ggplot2 layer for 'xpose_plots' |
| xplot_distrib | Default xpose distribution plot function |
| xplot_qq | Default xpose QQ plot function |
| xplot_scatter | Default xpose scatter plot function |
| xp_map | ggplot2 layer call |
| xpose_data | Import NONMEM output into R |
| xpose-package | xpose: graphical diagnostics for pharmacometric models |
| xpose_panels | Generic panel function for 'xpose_plots' |
| xpose_save | Save xpose plot |
| xp_themes | A set of xpose themes |
| xp_var | Access xpdb index information for a given variable or... |
