Global functions | |
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addActionButtonToTable | Source code |
calculateAutoLogTransformApplication | Source code |
calculateBatchCorrection | Source code |
calculateColorColumn | Source code |
calculateColorColumnTitle | Source code |
calculateCountsPerMillion | Source code |
calculateDifferentialGeneExpression | Source code |
calculateDifferentialGeneExpressionSummary | Source code |
calculateEachGroupsSamples | Source code |
calculateEachGroupsSamplesFromDataFrame | Source code |
calculateEachGroupsSamplesGsms | Source code |
calculateExclusiveColumns | Source code |
calculateGeoAccessionDirectory | Source code |
calculateKnnImpute | Source code |
calculateLogAdjustedPValue | Source code |
calculateLogPValue | Source code |
calculateLogTransformation | Source code |
calculateNaOmit | Source code |
calculateOverlapFractions | Source code |
calculatePrcompPca | Source code |
calculatePrincompPca | Source code |
calculateSampleNames | Source code |
calculateTopDifferentiallyExpressedGenes | Source code |
combineExpressionData | Source code |
convertAdjustment | Source code |
convertExperimentInformation | Source code |
convertExpressionDataToExperimentInformation | Source code |
convertGeneEnrichmentColumnNameToUserFriendlyName | Source code |
convertNaToZero | Source code |
convertTwoExperimentInformation | Source code |
convertUiSortingMethod | Source code |
convertUserUploadedoExperimentInformationToExperimentInformation | Source code |
createGeneAnnotationTable | Source code |
createGeoSupplementaryFilesDirectory | Source code |
createStudyLink | Source code |
deduplicatedExpressiondata | Source code |
deleteGeoSupplementaryFilesDirectory | Source code |
dowloadFile | Source code |
downloadGeoSupFiles | Source code |
enrichGenes | Source code |
extractDatabaseNamesFromEnrichR | Source code |
extractDifferenitallyExpressedGenes | Source code |
extractExperimentInformation | Source code |
extractExpressionCsv | Source code |
extractExpressionData | Source code |
extractExpressionDataFromGeoSupRawFiles | Source code |
extractExpressionExcel | Source code |
extractFileExtensions | Source code |
extractGeneSymbols | Source code |
extractGeoData | Source code |
extractGeoSupFiles | Source code |
extractPlatformGset | Source code |
extractPlatforms | Source code |
extractSampleDetails | Source code |
extractSampleInformation | Source code |
extractSampleNames | Source code |
extractUpregulatedGenes | Source code |
extractdowregulatedGenes | Source code |
geneEnrichmentColumnSelection | Source code |
geneEnrichmentPlotText | Source code |
getGeoObject | Source code |
interactive3DPrcompPcaIndividualsPlot | Source code |
interactive3DPrcompPcaVariablesPlot | Source code |
interactiveBoxAndWhiskerPlot | Source code |
interactiveDGEHeatMapPlot | Source code |
interactiveDensityPlot | Source code |
interactiveGeneEnrichmentBarPlot | Source code |
interactiveGeneEnrichmentManhattanPlot | Source code |
interactiveGeneEnrichmentVolcanoPlot | Source code |
interactiveHeatMapPlot | Source code |
interactiveHistogramPlot | Source code |
interactiveMeanDifferencePlot | Source code |
interactiveMeanVariancePlot | Source code |
interactivePrcompPcaIndividualsPlot | Source code |
interactivePrcompPcaScreePlot | Source code |
interactivePrcompPcaVariablesPlot | Source code |
interactivePrincompPcaIndividualsPlot | Source code |
interactivePrincompPcaScreePlot | Source code |
interactivePrincompPcaVariablesPlot | Source code |
interactiveQQPlot | Source code |
interactiveThreeDDensityPlot | Source code |
interactiveUmapPlot | Source code |
interactiveVolcanoPlot | Source code |
loadApp | Man page Source code |
loadDataSet2UiComponents | Source code |
loadDataSetCombinationUiComponents | Source code |
loadDataSetUiComponents | Source code |
nonInteractiveBoxAndWhiskerPlot | Source code |
nonInteractiveCorrelationMatrixPlot | Source code |
nonInteractiveDensityPlot | Source code |
nonInteractiveHistogramPlot | Source code |
nonInteractiveMeanVariancePlot | Source code |
nonInteractivePcaBiplotPlot | Source code |
nonInteractivePcaIndividualsPlot | Source code |
nonInteractivePcaScreePlot | Source code |
nonInteractivePcaVariablesPlot | Source code |
nonInteractiveQQPlot | Source code |
nonInteractiveUmapPlot | Source code |
nonInteractiveVennDiagramPlot | Source code |
nonInteractiveVolcanoPlot | Source code |
noninteractiveMeanDifferencePlot | Source code |
performExploratoryDataAnalysis | Source code |
plotGeneEnrichmentinformation | Source code |
preProcessGeneExpressionData | Source code |
readCsvFile | Source code |
readCsvFileFromGoogleDocs | Source code |
removeLowlyExpressedGenes | Source code Source code |
removeNonNumericColumnsFromExpressiondata | Source code |
removeWhiteSpace | Source code |
resetDifferentialGeneExpressionPlots | Source code |
resetErrorChecks | Source code |
resetExploratoryDataAnalaysisPlots | Source code |
resetGeneEnrichmentOutputs | Source code |
searchGeo | Source code |
selectTopGeneEnrichmentRecords | Source code |
sortGeneEnrichmentTable | Source code |
sourceContactUI | Source code |
sourceDatasetInformationUi | Source code |
sourceDifferentialGeneExpressionAnalysisUi | Source code |
sourceEnrichmentnUi | Source code |
sourceExampleUI | Source code |
sourceExploratoryDataAnalysisUi | Source code |
sourceGeoSearchUi | Source code |
sourceServer | Source code |
sourceSideBarUi | Source code |
sourceUi | Source code |
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