| addActionButtonToTable |
Source code
|
| calculateAutoLogTransformApplication |
Source code
|
| calculateBatchCorrection |
Source code
|
| calculateColorColumn |
Source code
|
| calculateColorColumnTitle |
Source code
|
| calculateCountsPerMillion |
Source code
|
| calculateDifferentialGeneExpression |
Source code
|
| calculateDifferentialGeneExpressionSummary |
Source code
|
| calculateEachGroupsSamples |
Source code
|
| calculateEachGroupsSamplesFromDataFrame |
Source code
|
| calculateEachGroupsSamplesGsms |
Source code
|
| calculateExclusiveColumns |
Source code
|
| calculateGeoAccessionDirectory |
Source code
|
| calculateKnnImpute |
Source code
|
| calculateLogAdjustedPValue |
Source code
|
| calculateLogPValue |
Source code
|
| calculateLogTransformation |
Source code
|
| calculateNaOmit |
Source code
|
| calculateOverlapFractions |
Source code
|
| calculatePrcompPca |
Source code
|
| calculatePrincompPca |
Source code
|
| calculateSampleNames |
Source code
|
| calculateTopDifferentiallyExpressedGenes |
Source code
|
| combineExpressionData |
Source code
|
| convertAdjustment |
Source code
|
| convertExperimentInformation |
Source code
|
| convertExpressionDataToExperimentInformation |
Source code
|
| convertGeneEnrichmentColumnNameToUserFriendlyName |
Source code
|
| convertNaToZero |
Source code
|
| convertTwoExperimentInformation |
Source code
|
| convertUiSortingMethod |
Source code
|
| convertUserUploadedoExperimentInformationToExperimentInformation |
Source code
|
| createGeneAnnotationTable |
Source code
|
| createGeoSupplementaryFilesDirectory |
Source code
|
| createStudyLink |
Source code
|
| deduplicatedExpressiondata |
Source code
|
| deleteGeoSupplementaryFilesDirectory |
Source code
|
| dowloadFile |
Source code
|
| downloadGeoSupFiles |
Source code
|
| enrichGenes |
Source code
|
| extractDatabaseNamesFromEnrichR |
Source code
|
| extractDifferenitallyExpressedGenes |
Source code
|
| extractExperimentInformation |
Source code
|
| extractExpressionCsv |
Source code
|
| extractExpressionData |
Source code
|
| extractExpressionDataFromGeoSupRawFiles |
Source code
|
| extractExpressionExcel |
Source code
|
| extractFileExtensions |
Source code
|
| extractGeneSymbols |
Source code
|
| extractGeoData |
Source code
|
| extractGeoSupFiles |
Source code
|
| extractPlatformGset |
Source code
|
| extractPlatforms |
Source code
|
| extractSampleDetails |
Source code
|
| extractSampleInformation |
Source code
|
| extractSampleNames |
Source code
|
| extractUpregulatedGenes |
Source code
|
| extractdowregulatedGenes |
Source code
|
| geneEnrichmentColumnSelection |
Source code
|
| geneEnrichmentPlotText |
Source code
|
| getGeoObject |
Source code
|
| interactive3DPrcompPcaIndividualsPlot |
Source code
|
| interactive3DPrcompPcaVariablesPlot |
Source code
|
| interactiveBoxAndWhiskerPlot |
Source code
|
| interactiveDGEHeatMapPlot |
Source code
|
| interactiveDensityPlot |
Source code
|
| interactiveGeneEnrichmentBarPlot |
Source code
|
| interactiveGeneEnrichmentManhattanPlot |
Source code
|
| interactiveGeneEnrichmentVolcanoPlot |
Source code
|
| interactiveHeatMapPlot |
Source code
|
| interactiveHistogramPlot |
Source code
|
| interactiveMeanDifferencePlot |
Source code
|
| interactiveMeanVariancePlot |
Source code
|
| interactivePrcompPcaIndividualsPlot |
Source code
|
| interactivePrcompPcaScreePlot |
Source code
|
| interactivePrcompPcaVariablesPlot |
Source code
|
| interactivePrincompPcaIndividualsPlot |
Source code
|
| interactivePrincompPcaScreePlot |
Source code
|
| interactivePrincompPcaVariablesPlot |
Source code
|
| interactiveQQPlot |
Source code
|
| interactiveThreeDDensityPlot |
Source code
|
| interactiveUmapPlot |
Source code
|
| interactiveVolcanoPlot |
Source code
|
| loadApp |
Man page
Source code
|
| loadDataSet2UiComponents |
Source code
|
| loadDataSetCombinationUiComponents |
Source code
|
| loadDataSetUiComponents |
Source code
|
| nonInteractiveBoxAndWhiskerPlot |
Source code
|
| nonInteractiveCorrelationMatrixPlot |
Source code
|
| nonInteractiveDensityPlot |
Source code
|
| nonInteractiveHistogramPlot |
Source code
|
| nonInteractiveMeanVariancePlot |
Source code
|
| nonInteractivePcaBiplotPlot |
Source code
|
| nonInteractivePcaIndividualsPlot |
Source code
|
| nonInteractivePcaScreePlot |
Source code
|
| nonInteractivePcaVariablesPlot |
Source code
|
| nonInteractiveQQPlot |
Source code
|
| nonInteractiveUmapPlot |
Source code
|
| nonInteractiveVennDiagramPlot |
Source code
|
| nonInteractiveVolcanoPlot |
Source code
|
| noninteractiveMeanDifferencePlot |
Source code
|
| performExploratoryDataAnalysis |
Source code
|
| plotGeneEnrichmentinformation |
Source code
|
| preProcessGeneExpressionData |
Source code
|
| readCsvFile |
Source code
|
| readCsvFileFromGoogleDocs |
Source code
|
| removeLowlyExpressedGenes |
Source code
Source code
|
| removeNonNumericColumnsFromExpressiondata |
Source code
|
| removeWhiteSpace |
Source code
|
| resetDifferentialGeneExpressionPlots |
Source code
|
| resetErrorChecks |
Source code
|
| resetExploratoryDataAnalaysisPlots |
Source code
|
| resetGeneEnrichmentOutputs |
Source code
|
| searchGeo |
Source code
|
| selectTopGeneEnrichmentRecords |
Source code
|
| sortGeneEnrichmentTable |
Source code
|
| sourceContactUI |
Source code
|
| sourceDatasetInformationUi |
Source code
|
| sourceDifferentialGeneExpressionAnalysisUi |
Source code
|
| sourceEnrichmentnUi |
Source code
|
| sourceExampleUI |
Source code
|
| sourceExploratoryDataAnalysisUi |
Source code
|
| sourceGeoSearchUi |
Source code
|
| sourceServer |
Source code
|
| sourceSideBarUi |
Source code
|
| sourceUi |
Source code
|
