Man pages for haimbar/betaMix
Detect Edges in Co-expression Graphs
| betaMix | Fit a two-component beta mixture model to the matrix of all... |
| calcCorr | Calculate pairwise correlations and print to a file. |
| clusteringCoef | Calculate the clustering coefficient of each node. |
| collapsedGraph | Reduce an adjacency matrix to include only central nodes and... |
| DrySeeds | Metabolite Expression data for the the dry seed group. |
| getAdjMat | Get the adjacency matrix if the pairwise correlation data is... |
| graphComponents | Find clusters, and return node characteristics. |
| plotBitmapCC | Edge-indicator bitmap plot. |
| plotCluster | Plot cluster network |
| plotDegCC | Plot the degree of nodes versus the degree times the... |
| plotFittedBetaMix | Plot the histogram of the z_j and the fitted mixture... |
| shortestPathDistance | Return a Matrix with the shortest path distance between nodes... |
| shortSummary | Print a short summary of the fitted mixture model. |
| SIM | Simulated gene Expression data using the huge package |
| SixHourImbibed | Metabolite Expression data for the the 6-hour imbibed seed... |
| sphericalCaps | Find spherical caps with more than one node. |
| summarizeClusters | Show cluster characteristics. |
