Man pages for haizi-zh/bedtorch
R package for fast BED-file manipulation
| as.bedtorch_table | Convert a 'GenomicRanges' or a 'data.frame' BED to standard... |
| as.GenomicRanges | Convert a 'data.frame' representation to 'GenomicRanges'... |
| cluster_bed | Cluster intervals |
| complement_bed | Generate complement |
| exclude_bed | Exclude certain regions |
| hs_seqinfo | hs_seqinfo |
| intersect_bed | Apply 'intersect' operation between two tables |
| jaccard_bed | Jaccard distance |
| make_random_bed | Randomly place intervals of fixed width across genome |
| make_windows | Make windows along genome |
| map_bed | Map over scaffold intervals |
| merge_bed | Merge overlapping intervals |
| read_bed | Load a BED-format file |
| read_metadata | metadata are defined as # comment lines, in the form of... |
| reldist_bed | Relative distance distribution |
| rollmean | Calculate rolling means |
| rollsum | Calculate rolling sums |
| shuffle_bed | Shuffle intervals |
| slop_bed | Slop intervals |
| subtract_bed | Subtract |
| write_bed | Write a 'data.table' to file |
