Man pages for haizi-zh/cragr
R package for CRAG
| assign_seqinfo | Guess whether the seqinfo is hg19/hg38 or GRCh37/38 by... |
| calc_gc | Calculate GC content for each fragment |
| calc_pois_pval | Calculate p-values based on Poisson model for each window |
| calc_pois_pval_local | Calculate local p-values based on Poisson model for each... |
| call_hotspot | Call hotspots using FDR only |
| check_binaries | Check if required binaries exist in PATH |
| combat | Batch effect correction based on ComBat algorithm |
| gc_correct | Perform GC-correction for IFS scores |
| ifs_score | Calculate raw IFS scores |
| jaccard_index | Compare two hotspot files and return the Jaccard index |
| read_fragments | Read fragment BED file |
