Man pages for hckiang/glinvci
Phylogenetic Comparative Methods with Uncertainty Estimates
| clone_model | Clone a GLInv model |
| fit.glinv | Fitting a GLInv model via numerical optimisation |
| get_restricted_ou | Convenience function for constructing... |
| glinv | Construct an GLInv model with respect to user-specified... |
| glinvci | glinvci: Confidence intervals and hypothesis testing for... |
| glinv_gauss | Construct an object representing a GLInv model with respect... |
| grad | Compute the log-likelihood gradients of GLInv models |
| has_tipvals | Check if a 'glinv_gauss' model contains trait values at their... |
| hess | Compute the log-likelihood Hessian of GLInv models |
| lik | Compute the likelihood of a GLInv model |
| marginal_ci | Getting marginal confidence interval for GLInv model |
| nparams_ou | Get the number of parameters of the unrestricted OU model |
| ou_haltlost | Handling missing data and lost traits in Ornstein-Uhlenbeck... |
| oupar | Parameterisation functions of Ornstein-Uhlenbeck model |
| parameter_restriction | Restrict the parameters space of OU and Brownian motion... |
| reexports | Objects exported from other packages |
| rglinv | Simulate random trait values from models. |
| set_tips | Set trait values at the tip for a 'glinv_gauss' model. |
| varest | Estimate the variance-covariance matrix of the maximum... |
