Man pages for heibl/rpg
Multiple Sequence Alignment with PASTA and GUIDANCE
| align_part_set | Co-optimal alignments from tree partitions |
| c.AAbin | c.AAbin |
| centroidDecomposition | Centroid Decomposition of Phylogenetic Trees |
| compareMSAs | Compare reference MSAs with alternative MSAs |
| confidence.heatmap | Plot heatmap of cofidence on MSA |
| equalSubtrees | Split Phylogeny Equally |
| guidance | GUIDetree-based AligNment ConficencE |
| guidance2 | GUIDetree-based AligNment ConficencE 2 |
| hello | Hello, World! |
| HoT | Heads or Tails alignment reliability |
| mafft2 | Sequence Alignment with MAFFT |
| msaBP | Bootstrap a multiple sequence alignnment |
| msaBP_nj_tree | Generate NJ BP tree from MSA |
| partitions | Create n-3 partitions from tree @export |
| pasta | Ultra-Large Multiple Sequence Alignment with PASTA |
| rcpp_hello | Hello, Rcpp! |
| rev_DNA | Reverse DNA sequences from class DNAbin or AAbin |
| spanningTree | Minimum-Spanning-Tree for PASTA |
