Files in hheiling/IsoDeconvMM

Performs Cell Type Deconvolution using Differential Isoform Information

R/EffectiveLength_Total.R R/Production_Functions_MixedSamp.R R/Production_Functions_PureSamp.R R/RcppExports.R R/cluster_info.R R/cuffdiff_calls.R R/geneModel_creation.R R/geneModel_multcell_edit.R R/isoDeconvMM.R R/isoDeconv_geneModel_revised.R R/loadData_edit.R R/rem_clust.R R/summarize_results.R README.md inst/Call_Model/Revised_Compile.R inst/Call_Model/Revised_Sim_MixCode_SI.R inst/Call_Model/Revised_Sim_Mix_Calls_MI.R inst/Call_Model/Revised_Sim_PS_calls_new.R inst/Call_Model/Revised_Sim_PS_codeNew.R inst/IsoDeconvMM Pipeline.Rmd inst/Mixture_Creation/EffectiveLength_Total.R inst/Mixture_Creation/GeneModel_Build.R inst/Mixture_Creation/RecharacterizeOutput.R inst/Mixture_Creation/Restricting_Geneids_Pairwise.R inst/Mixture_Creation/downsample_prog.R inst/Mixture_Creation/geneModel_multcell_edit.R inst/Mixture_Creation/loadData_edit.R inst/Mixture_Creation/merge_downsample.R inst/Mixture_Creation/merge_downsamplev2.R inst/Mixture_Creation/pdist_gen.R inst/Mixture_Creation/rem_clust.R inst/PlotSpecs_New.R inst/Process_Real_Data/CN_computation.R inst/Process_Real_Data/Cufflinks_Calls.R inst/Process_Real_Data/FragLengths_Function_mixture.R inst/Process_Real_Data/Tophat_Calls.R inst/Process_Real_Data/prepare_sigred.R inst/Process_Real_Data/step1_check_and_filter.R inst/Process_Real_Data/step2_read_depth.R inst/Process_Real_Data/step3_countReads.R inst/Process_Real_Data/step4_summarize_counts.R inst/Production_Functions/PS Production Functions (Err Control).R inst/Production_Functions/Production Functions (Err_Control_MI_v2).R inst/Production_Functions/isoDeconv_geneModel_revised.R man/isoDeconvMM.Rd man/rcpparma_hello_world.Rd