API for hillarykoch/locdiffr
analysis of LOCal DIFFerences in chromatin aRchitecture
| Global functions | |
|---|---|
| ccompute_bwfdr | Source code |
| ccompute_bwfdx | Source code |
| cgeteigs | Source code |
| check_lower_tri | Source code |
| cifelse | Source code |
| cifelse_eigvals | Source code |
| cinv | Source code |
| cmake_adj_mat | Source code |
| cmake_one_pred_sparse | Source code |
| compute_area_based_error_rate | Source code |
| cpopulate_rejected_differences | Source code |
| cpopulate_true_differences | Source code |
| cpwdist | Source code |
| crunif | Source code |
| csolve_for_A_and_D | Source code |
| csolve_for_A_and_D_2d | Source code |
| csolve_for_B_and_b | Source code |
| csolve_for_B_and_b_2d | Source code |
| csparse_quadratic_form_asymm | Source code |
| csparse_quadratic_form_asymm_2d | Source code |
| csparse_quadratic_form_symm | Source code |
| csparse_quadratic_form_symm_2d | Source code |
| ctest_hierarchically | Source code |
| downsample_to_equal_reads | Source code |
| est_scc | Source code |
| extend_mcmc | Source code |
| extend_nn_mcmc | Source code |
| fastMeanFilter | Source code |
| fishT | Source code |
| fit_nngp | Man page Source code |
| get_2d_neighbor_list | Source code |
| get_background_enrichment | Source code |
| get_cor | Source code |
| get_cor_sparse | Source code |
| get_enrichment | Source code |
| get_ldet | Source code |
| get_loc_sim | Source code |
| get_log_det | Source code |
| get_max_range | Source code |
| get_neighbor_list | Source code |
| get_rejection_enrichment | Source code |
| get_scc | Source code |
| get_z | Source code |
| hic_ld | Source code |
| make_BED_from_rejections | Man page Source code |
| make_adj_matrix_from_z_list | Source code |
| make_pred | Source code |
| make_pred_sparse | Source code |
| plot_cond_vs_cond | Source code |
| plot_rej_vs_diffs | Source code |
| plot_rejections_along_process | Source code |
| run_nnsgp | Source code |
| run_scc_scan | Man page Source code |
| sample_new_nngps | Man page Source code |
| stripones | Source code |
| test_by_wFDR | Man page Source code |
| test_by_wFDX | Man page Source code |
| test_hierarchically | Source code |
| update_var | Source code |
| vstran | Source code |
| wFDR | Source code |
| wFDX | Source code |
| write_LGF | Source code |
