Files in hillarykoch/locdiffr
analysis of LOCal DIFFerences in chromatin aRchitecture
DESCRIPTION
LICENSE
NAMESPACE
R/.DS_Store
R/.Rhistory
R/RcppExports.R
R/downstream.R
R/enrichment_functions.R
R/evaluating_FDR_control.R
R/helpers.R
R/hic_helpers.R
R/hicrep_functions.R
R/hierarchical_testers.R
R/plotters.R
R/scc2z.R
R/snngp1d.R
R/sparse_linear_algebra.R
R/testers.R
R/wrappers.R
README.md
data/brd2.rda
inst/extdata/KO1.tsv
inst/extdata/KO2.tsv
inst/extdata/output/fit.rds
inst/extdata/output/null_wfdr.bed
inst/extdata/output/pred.rds
inst/extdata/output/rejected_wfdr.bed
inst/extdata/output/wfdr.rds
inst/extdata/output/wfdx.rds
inst/extdata/output/z.rds
inst/extdata/parent1.tsv
inst/extdata/parent2.tsv
locdiffr.Rproj
man/fit_nngp.Rd
man/make_BED_from_rejections.Rd
man/run_scc_scan.Rd
man/sample_new_nngps.Rd
man/test_by_wFDX.Rd
src/.DS_Store
src/RcppExports.cpp
src/crun_sgp.cpp
src/dagger.h
src/evaluating_FDR_control.cpp
src/fastMeanFilter.cpp
src/gpcpp.cpp
src/hierarchical_testing.cpp
src/myrng.h
src/sparse_gpcpp.cpp
src/testing_helpers.cpp
vignettes/.gitignore
vignettes/locdiffr.Rmd
vignettes/locdiffr_cache/html/__packages
vignettes/locdiffr_cache/html/unnamed-chunk-3_c915c1dabc2483196b36449e3514e4de.RData
vignettes/locdiffr_cache/html/unnamed-chunk-3_c915c1dabc2483196b36449e3514e4de.rdb
vignettes/locdiffr_cache/html/unnamed-chunk-3_c915c1dabc2483196b36449e3514e4de.rdx
vignettes/locdiffr_cache/html/unnamed-chunk-5_bc859a1bfda83bae978c8c9a660a51fc.RData
vignettes/locdiffr_cache/html/unnamed-chunk-5_bc859a1bfda83bae978c8c9a660a51fc.rdb
vignettes/locdiffr_cache/html/unnamed-chunk-5_bc859a1bfda83bae978c8c9a660a51fc.rdx
vignettes/locdiffr_cache/html/unnamed-chunk-6_911d2ca38871159d681b6e87dfb54536.RData
vignettes/locdiffr_cache/html/unnamed-chunk-6_911d2ca38871159d681b6e87dfb54536.rdb
vignettes/locdiffr_cache/html/unnamed-chunk-6_911d2ca38871159d681b6e87dfb54536.rdx
vignettes/locdiffr_files/figure-html/unnamed-chunk-4-1.png
vignettes/locdiffr_files/figure-html/unnamed-chunk-6-1.png
vignettes/locdiffr_files/figure-html/unnamed-chunk-7-1.png
vignettes/locdiffr_files/figure-html/unnamed-chunk-8-1.png
vignettes/locdiffr_files/figure-html/unnamed-chunk-9-1.png
