hk1785/GLMM-MiRKAT: A distance-based kernel association test based on the generalized linear mixed model
This sofware package provides facilities for GLMM-MiRKAT/aGLMM-MiRKAT which tests the association betweem microbial community (e.g., bacterial kingdom) composition and a host trait of interest (e.g., health/disease status, medical intervention, behavioral/environmental factor) based on correlated (e.g., family-based or longitudinal) microbiome studies. For the host trait of interest, Gaussian (e.g., body mass index), Binomial (e.g., disease status, treatment/placebo) or Poisson (e.g., number of tumors/treatments) traits can be handled.
Getting started
Browse package contents
Package details |
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| Author | Hyunwook Koh |
| Maintainer | Hyunwook Koh <hkoh7@jhu.edu> |
| License | GPL-2 |
| Version | 1.2 |
| URL | https://github.com/hk1785/GLMM-MiRKAT |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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