Man pages for hmorzaria/pssalmonsurvival
Sensitivity analysis of salmon survival in Puget Sound
| dietcheck | Predation on salmon individual scenarios |
| dietcheckcum | Salmon consumption |
| ensemblebiomass | Biomass individual scenarios |
| ensemblebiomasscum | Biomass cumulative scenarios |
| ensemblenumbersage | A data set of salmon group numbers at age of 30 yr ensemble... |
| ensemblenumbersagescenarios | Numbers at age individual scenarios |
| ensemblenumberscum | Numbers-at-age cumulative scenarios |
| ensemblewagecum | Weight-at-age in cumulative scenarios |
| ensemblewageind | Weight-at-age in individual scenarios |
| extract_base_cum_survival | plot salmon survival of cumulative scenarios of ensemble... |
| functionalgroups | AMPS functional groups |
| get_salmonpredators | Get salmon predators |
| get_shapefile | download shapefiles |
| groupguilds | Group guilds |
| indsalmoneffect | Expected salmon effects individual scenarios |
| make_forcing | make forcing files for salmon survival |
| make_map | Mapping Atlantis polygons |
| make_trajectories | analyze trajectories |
| pipe | Pipe operator |
| plot_dietcheck | Plot Dietcheck time series |
| plot_dietcheckcum | Plot Dietcheckcum time series |
| plot_ensemblebiomass | plot biomass of ensemble models |
| plot_ensemble_cum_survival_scenarios | plot salmon survival of cumulative impact scenarios |
| plot_ensemble_survival | plot salmon survival of ensemble models |
| plot_ensemble_survival_scenarios | plot salmon survival of ensemble models |
| plot_ensemble_survival_scenarios_timeseries | plot time series of salmon survival from ensemble models |
| plot_foodweb | plot Atlantis food web |
| plot_interaction_effect | Plot interaction effect |
| plot_predation | plot predation |
| plot_predators | plot biomass salmon predators |
| plot_predatorscum | plot biomass salmon predators in cumulative scenarios |
| plot_salmon_abundance | plot salmon abundance from Lossee et al |
| plot_watage | Plot weight-at-age for individual scenarios |
| plot_watage_cum | Plot weight-at-age for cumulative scenarios |
| ppreymatrix | Prey matrix |
| predgroups | Consumer groups |
| round_num | round_num |
| salmonbybasin | Salmon by basin |
| salmon_colors | Vector of custom salmon colors |
| salmoneffect | Expected salmon effect |
| scenariocategories | scenariocategories |
