Man pages for hodgeslab/tidycyte
Tidycyte
| average_across_images | Average tidycyte metrics across images |
| derive_metric | Derive tidycyte metric using arithmetic or function |
| id_to_cell | Extracts cell name from tidycyte sample ID |
| id_to_image | Extracts image number from tidycyte sample ID |
| id_to_passage | Extracts passage number from tidycyte sample ID |
| id_to_seeding | Extracts seeding conditions from tidycyte sample ID |
| id_to_treatment | Extracts treatment from tidycyte sample ID |
| id_to_well | Extracts well from tidycyte sample ID |
| metrics_to_fractions | Calculate fractions from a set of tidycyte metrics |
| normalize_by_metric | Normalize tidycyte metrics by other specified metrics |
| normalize_by_time | Normalize tidycyte metrics by specified time points |
| parse_incucyte_matrices | Read and parse Incucyte matrices |
| parse_metric | Parse an individual incucyte metric table and return tidycyte... |
| replace_maximum_value_in_metric | Replace tidycyte metric values above threshold |
| replace_minimum_value_in_metric | Replace tidycyte metric values below threshold |
| replace_na_value_in_metric | Replace tidycyte metric values with NA values |
| scale_metric | Scale tidycyte metric |
| sum_across_images | Sums tidycyte metrics across images |
| summary_stats | Calculate summary statistics for tidycyte data |
| timepoint_norm_group | Normalize an individual tidycyte metric data frame by time |
