| .DGraphNodes_summary |
Source code
|
| .DGraph_summary |
Source code
|
| .as_SelfHits |
Source code
|
| .attrData_as_DataFrame_or_NULL |
Source code
|
| .connComp_SelfHits |
Source code
|
| .dbselect |
Source code
|
| .edgeData_as_DataFrame_or_NULL |
Source code
|
| .fetch_GO_parents |
Source code
|
| .fetch_GO_terms |
Source code
|
| .from_AnnotatedIDs_to_naked_character_matrix_for_display |
Source code
|
| .from_DGraphNodes_to_naked_character_matrix_for_display |
Source code
|
| .from_DGraph_to_naked_character_matrix_for_display |
Source code
|
| .from_NodesAndEdges_to_DGraph |
Source code
|
| .from_NodesAndEdges_to_DGraphNodes |
Source code
|
| .from_NodesAndEdges_to_graphNEL |
Source code
|
| .from_graphNEL_to_NodesAndEdges |
Source code
|
| .from_ngCMatrix_to_NodesAndEdges |
Source code
|
| .from_ngCMatrix_to_SelfHits |
Source code
|
| .make_adjacencyMatrix_from_SelfHits |
Source code
|
| .make_graphNEL_nodes |
Source code
|
| .new_DGraph |
Source code
|
| .new_DGraphNodes |
Source code
|
| .new_NodesAndEdges |
Source code
|
| .nodeData_as_DataFrame_or_NULL |
Source code
|
| .normalize_undirected_edges |
Source code
|
| .normarg_godb |
Source code
|
| .normarg_nodes |
Source code
|
| .prepare_attrData |
Source code
|
| .show_AnnotatedIDs |
Source code
|
| .show_DGraph |
Source code
|
| .show_DGraphNodes |
Source code
|
| .validate_NodesAndEdges |
Source code
|
| AnnotatedIDs |
Man page
Source code
|
| AnnotatedIDs-class |
Man page
|
| DGraph |
Man page
Source code
|
| DGraph-class |
Man page
|
| DGraphNodes |
Source code
|
| ID |
Man page
|
| ID,AnnotatedIDs-method |
Man page
|
| UGraph |
Source code
|
| adjacencyMatrix |
Man page
|
| adjacencyMatrix,Graph-method |
Man page
|
| as.data.frame.Graph |
Source code
|
| as.vector,AnnotatedIDs-method |
Man page
|
| class:AnnotatedIDs |
Man page
|
| class:DGraph |
Man page
|
| coerce,ANY,DGraph-method |
Man page
|
| coerce,DGraph,DFrame-method |
Man page
|
| coerce,Graph,ngCMatrix-method |
Man page
|
| coerce,NodesAndEdges,graphNEL-method |
Man page
|
| coerce,graphNEL,NodesAndEdges-method |
Man page
|
| coerce,ngCMatrix,NodesAndEdges-method |
Man page
|
| connComp |
Man page
|
| connComp,Graph-method |
Man page
|
| degree |
Man page
|
| degree,ANY-method |
Man page
|
| edgeMatrix |
Man page
|
| edgeMatrix,Graph-method |
Man page
|
| edgemode |
Man page
|
| edgemode,Graph-method |
Man page
|
| edgemode<- |
Man page
|
| edgemode<-,DGraph,ANY-method |
Man page
|
| edges |
Man page
|
| edges,NodesAndEdges-method |
Man page
|
| elementMetadata,DGraph-method |
Man page
|
| elementMetadata<-,DGraph-method |
Man page
|
| from,Graph-method |
Man page
|
| fromNode |
Man page
|
| fromNode,Graph-method |
Man page
|
| inDegree |
Man page
|
| inDegree,Graph-method |
Man page
|
| isConnected |
Man page
|
| isConnected,ANY-method |
Man page
|
| isDirected |
Man page
|
| isDirected,DGraph-method |
Man page
|
| makeDGraphFromGO |
Man page
Source code
|
| make_annotated_nodes |
Source code
|
| make_node_labels |
Source code
|
| match,ANY,AnnotatedIDs-method |
Man page
|
| match,AnnotatedIDs,ANY-method |
Man page
|
| match,AnnotatedIDs,AnnotatedIDs-method |
Man page
|
| names,AnnotatedIDs-method |
Man page
|
| names<-,AnnotatedIDs,ANY-method |
Man page
|
| nodes |
Man page
|
| nodes,NodesAndEdges-method |
Man page
|
| nodes<- |
Man page
|
| nodes<-,NodesAndEdges,ANY-method |
Man page
|
| numEdges |
Man page
|
| numEdges,Graph-method |
Man page
|
| numNodes |
Man page
|
| numNodes,ANY-method |
Man page
|
| outDegree |
Man page
|
| outDegree,Graph-method |
Man page
|
| pcompare,ANY,AnnotatedIDs-method |
Man page
|
| pcompare,AnnotatedIDs,ANY-method |
Man page
|
| pcompare,AnnotatedIDs,AnnotatedIDs-method |
Man page
|
| selfmatch,AnnotatedIDs-method |
Man page
|
| show,AnnotatedIDs-method |
Man page
|
| show,DGraph-method |
Man page
|
| showAsCell,AnnotatedIDs-method |
Man page
|
| summary,DGraph-method |
Man page
|
| summary.DGraph |
Man page
Source code
|
| summary.DGraphNodes |
Source code
|
| t,NodesAndEdges-method |
Man page
|
| to,Graph-method |
Man page
|
| toNode |
Man page
|
| toNode,Graph-method |
Man page
|
| vertical_slot_names,AnnotatedIDs-method |
Man page
|
| vertical_slot_names,DGraph-method |
Man page
|
| xtfrm,AnnotatedIDs-method |
Man page
|
