Files in hugheylab/limorhyde2
Quantify Rhythmicity and Differential Rhythmicity in Genomic Data
.Rbuildignore
.github/workflows/check-deploy.yaml
.github/workflows/lint.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
CRAN-SUBMISSION
DESCRIPTION
NAMESPACE
NEWS.md
R/data.R
R/examples.R
R/get_expected.R
R/get_model.R
R/get_model_utils.R
R/get_posterior.R
R/get_stats.R
R/get_stats_utils.R
README.md
_pkgdown.yml
codecov.yml
cran-comments.md
data-raw/make_data.R
data/GSE34018.rda
data/GSE54650.rda
limorhyde2.Rproj
lint_ignore.csv
man/GSE34018.Rd
man/GSE54650.Rd
man/getDiffRhythmStats.Rd
man/getExpectedMeas.Rd
man/getExpectedMeasIntervals.Rd
man/getModelFit.Rd
man/getPosteriorFit.Rd
man/getPosteriorSamples.Rd
man/getRhythmStats.Rd
man/getStatsIntervals.Rd
man/mergeMeasMeta.Rd
tests/testthat.R
tests/testthat/data/diff_rhy_stats_post_2.qs
tests/testthat/data/diff_rhy_stats_samps12_2.qs
tests/testthat/data/diff_rhy_stats_samps32_2.qs
tests/testthat/data/expected_meas_2.qs
tests/testthat/data/expected_meas_3.qs
tests/testthat/data/meas_ints_2.qs
tests/testthat/data/model_fit_1.qs
tests/testthat/data/model_fit_2.qs
tests/testthat/data/model_fit_3.qs
tests/testthat/data/model_fit_4.qs
tests/testthat/data/posterior_fit_2.qs
tests/testthat/data/posterior_samples_2.qs
tests/testthat/data/rhy_stats_post_2.qs
tests/testthat/data/rhy_stats_raw_1.qs
tests/testthat/data/rhy_stats_samps_2.qs
tests/testthat/data/stats_ints_diff_2.qs
tests/testthat/data/stats_ints_rhy_2.qs
tests/testthat/setup.R
tests/testthat/test_exported.R
tests/testthat/test_model_utils.R
tests/testthat/test_stats_utils.R
vignettes/.gitignore
vignettes/differential-rhythmicity.Rmd
vignettes/rhythmicity.Rmd
vignettes/rnaseq.Rmd
vignettes/uncertainty.Rmd
