Files in hyochoi/SCISSOR
Shape changes in selecting sample outliers in RNA-seq
.DS_Store
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/ADstat.hy.R
R/ADstatWins.hy.R
R/PCnum.gamma.hy.R
R/RNAcurve.R
R/RNAcurveOne.R
R/Relist.hy.R
R/Scissor.R
R/SlogADstat.hy.R
R/adj.center.R
R/angle.hy.R
R/bisquare.sse.R
R/build_gaf.R
R/build_pileup.R
R/center_data.R
R/check_normals.R
R/compScales.R
R/decay.rate.hy.R
R/estimate_offset.R
R/fastSplitSample.R
R/find.exon.hy.R
R/generdir.R
R/getShiftParam.R
R/get_PO.R
R/get_Ranges.R
R/get_junctions.R
R/get_sparsePD4one.R
R/get_splicedReads.R
R/interpolate.hy.R
R/junction_outliers.R
R/kdeplot.hy.R
R/len.intron.hy.R
R/lm.pval.R
R/logtransform_data.R
R/miscGlobal.R
R/miscLocal.R
R/normalize_data.R
R/palette_SCISSOR.R
R/pca.hy.R
R/pca2misc.R
R/pd.rate.hy.R
R/plot_ScissorOS.R
R/plot_ScissorSC.R
R/plot_offset.R
R/plot_pileup.R
R/pos.sd.R
R/process_pileup.R
R/read_BAM.R
R/resmat.outliers.hy.R
R/rhoHuber.R
R/scale.factor.R
R/scale1StepM.R
R/yaxis.hy.R
README.md
SCISSOR.Rproj
data/.DS_Store
data/TOY_coverage.txt
data/TOY_data.RData
docs/.DS_Store
docs/about.md
docs/example.md
docs/images/TOY_OS_kdeplot.png
docs/images/TOY_log.png
docs/images/TOY_raw.png
docs/images/TOY_raw_pileup.png
docs/images/TOY_results.png
docs/index.md
docs/installation.md
docs/tutorial.md
man/ADstat.hy.Rd
man/ADstatWins.hy.Rd
man/PCnum.gamma.hy.Rd
man/RNAcurve.Rd
man/Scissor.Rd
man/adj.center.Rd
man/build_gaf.Rd
man/build_pileup.Rd
man/center_data.Rd
man/detect_localout.Rd
man/find.exon.hy.Rd
man/generdir.Rd
man/getShiftParam.Rd
man/get_Ranges.Rd
man/get_SRcount.Rd
man/get_offstat.Rd
man/get_sparsePD4one.Rd
man/kdeplot.hy.Rd
man/len.intron.hy.Rd
man/logtransform_data.Rd
man/miscGlobal.Rd
man/miscLocal.Rd
man/normalize_data.Rd
man/palette_SCISSOR.Rd
man/pd.rate.hy.Rd
man/plot_ScissorOS.Rd
man/plot_ScissorSC.Rd
man/plot_pileup.Rd
man/process_pileup.Rd
man/read_BAM.Rd
man/scale.factor.Rd
mkdocs.yml
site/about/index.html
site/css/theme.css
site/css/theme_extra.css
site/example/index.html
site/fonts/Lato/lato-bold.eot
site/fonts/Lato/lato-bold.ttf
site/fonts/Lato/lato-bold.woff
site/fonts/Lato/lato-bold.woff2
site/fonts/Lato/lato-bolditalic.eot
site/fonts/Lato/lato-bolditalic.ttf
site/fonts/Lato/lato-bolditalic.woff
site/fonts/Lato/lato-bolditalic.woff2
site/fonts/Lato/lato-italic.eot
site/fonts/Lato/lato-italic.ttf
site/fonts/Lato/lato-italic.woff
site/fonts/Lato/lato-italic.woff2
site/fonts/Lato/lato-regular.eot
site/fonts/Lato/lato-regular.ttf
site/fonts/Lato/lato-regular.woff
site/fonts/Lato/lato-regular.woff2
site/fonts/RobotoSlab/roboto-slab-v7-bold.eot
site/fonts/RobotoSlab/roboto-slab-v7-bold.ttf
site/fonts/RobotoSlab/roboto-slab-v7-bold.woff
site/fonts/RobotoSlab/roboto-slab-v7-bold.woff2
site/fonts/RobotoSlab/roboto-slab-v7-regular.eot
site/fonts/RobotoSlab/roboto-slab-v7-regular.ttf
site/fonts/RobotoSlab/roboto-slab-v7-regular.woff
site/fonts/RobotoSlab/roboto-slab-v7-regular.woff2
site/fonts/RobotoSlab/roboto-slab.eot
site/fonts/fontawesome-webfont.eot
site/fonts/fontawesome-webfont.svg
site/fonts/fontawesome-webfont.ttf
site/fonts/fontawesome-webfont.woff
site/fonts/fontawesome-webfont.woff2
site/images/TOY_OS_kdeplot.png
site/images/TOY_log.png
site/images/TOY_raw.png
site/images/TOY_raw_pileup.png
site/images/TOY_results.png
site/img/favicon.ico
site/index.html
site/installation/index.html
site/js/jquery-2.1.1.min.js
site/js/modernizr-2.8.3.min.js
site/js/theme.js
site/search.html
site/search/lunr.js
site/search/main.js
site/search/search_index.json
site/search/worker.js
site/sitemap.xml
site/sitemap.xml.gz
site/tutorial/index.html
