Man pages for icr-ctl/animl
A Collection of ML Tools for Conservation Research
| animl | Title |
| applyPredictions | Apply Classifier Predictions and Merge DataFrames |
| bestGuess | Select Best Classification From Multiple Frames |
| buildFileManifest | Extract exif Data and Create File Manifest |
| checkFile | Check for files existence and prompt user if they want to... |
| convertCoordinates | Convert bbox from Relative to Absolute Coordinates |
| cropImageGenerator | Tensorflow data generator that crops images to bounding box. |
| cropImages | Crops all images from an input file with specific required... |
| cropImageTrainGenerator | Tensorflow data generator for training that crops images to... |
| detectObject | Run MD on a Single Image |
| detectObjectBatch | Run MegaDetector on a batch of images |
| extractBoxes | Extract bounding boxes and save as new image from a batch of... |
| extractBoxesFromFlat | Extract crops from a single image represented by a processed... |
| extractBoxesFromMD | Extract bounding boxes for a single image and save as new... |
| getAnimals | Return a dataframe of only MD animals |
| getEmpty | Return MD empty, vehicle and human images in a dataframe |
| imageAugmentationColor | Perform image augmentation through random color adjustments... |
| imageAugmentationGeometry | Perform random geometric transformations on an image. |
| ImageGenerator | Tensorflow data generator that resizes images. |
| ImageGeneratorSize | Tensorflow data generator that resizes images and returns... |
| imageLabel | Load image and return a tensor with an image and a... |
| imageLabelCrop | Load image, crop and return a tensor with an image and a... |
| imagesFromVideos | Extract frames from video for classification |
| loadData | Load .csv or .Rdata file |
| loadImage | Load an image and return the full size image as an image... |
| loadImageResize | Load and resize an image and return an image tensor. |
| loadImageResizeCrop | Load, resize and crop an image and return an image tensor. |
| loadImageResizeSize | Load and resize an image and return an image tensor as well... |
| loadMDModel | Load MegaDetector model file from directory or file |
| parseMD | parse MD results into a simple dataframe |
| parseMDjson | converte the JSON file produced bye the Python version of... |
| pipe | Pipe operator |
| plotBoxes | Plot bounding boxes on image from md results |
| predictSpecies | Classifies Crops Using Specified Models |
| processYOLO5 | Process YOLO5 output and convert to MD format |
| resizePad | Resize an image with padding |
| saveData | Save Data to Given File |
| sequenceClassification | Leverage sequences to classify images |
| setupDirectory | Set Working Directory and Save File Global Variables |
| setupEnv | Setup Conda Environment |
| symlinkMD | Create SymLink Directories and Sort Classified Images Based... |
| symlinkSpecies | Create SymLink Directories and Sort Classified Images |
| symUnlink | Remove Symlinks |
| testMD | Select a Random Image and Run Through MegaDetector |
| updateResults | Title |
