| dcda | Domain Content Dissimilarity Analysis |
| getIdsFromStats | Get Pfam Ids From Hmmstats output |
| hmmPress | hmmPress |
| hmmSearch | Run hmmsearch (HMMER 3) |
| hmmStat | Compute Hmm Stats |
| readDomtblout | Process hmmsearch output to make it 'R'eadable. |
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