| abovecanopytemp | Calculates temperature above canopy |
| climvars | A list of climate variables |
| dailyprecip | A vector of daily precipitation |
| dot-leafabs2 | Internal function for calculating lead absorbed radiation on... |
| dot-runmodelsnow | Internal function for running model with snow |
| dot-snowsort | internal function to sort out vegetation parameters for snow |
| dot-snowtempf | Internation function for computing snow temperature |
| dot-vegpsort | internal function to sort out vegetation parameters |
| dot-windprofile | Internal function for calculating lead absorbed radiation on... |
| leafabs | Calculates radiation absorbed by leaf |
| leafem | Calculates radiation emitted by leaf |
| leaftemp | Calculates leaf temperature of canopy layers |
| paraminit | Initialise paramaters for first time step of model |
| runmodel | Runs the microclimate model over time |
| runmodelS | Run model under steady state conditions |
| runNMR | Runs NicheMapR model |
| runonestep | Run canopy model for a single time step |
| runwithNMR | Runs microclimate model in hourly timesteps with NicheMapR |
| soilinit | Returns soil parameters for a given soil type |
| soilparams | A table of soil parameters |
| spinup | Model spin-up for first time-step |
| Thomas | Thomas algorithm for solving simultanious heat fluxes |
| ThomasV | Thomas algorithm for solving simultanious vapour fluxes |
| tleafS | Steady-state leaf and air temperature |
| weather | A data frame of hourly weather |
| windcanopy | Calculates wind profile for individual canopy layers |
| windprofile | Calculates wind profile for entire canopy |
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